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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633369_s_at:

>probe:Drosophila_2:1633369_s_at:393:103; Interrogation_Position=2809; Antisense; AGACGCGAGAGTGCTTCCGGAATCA
>probe:Drosophila_2:1633369_s_at:226:365; Interrogation_Position=2828; Antisense; GAATCACGACAACAGCGTCCGAGGA
>probe:Drosophila_2:1633369_s_at:613:461; Interrogation_Position=2851; Antisense; GATTCCGCTGGTGTTGAGGAGTCCT
>probe:Drosophila_2:1633369_s_at:417:437; Interrogation_Position=2866; Antisense; GAGGAGTCCTCCGTAGGAGCTGACT
>probe:Drosophila_2:1633369_s_at:528:417; Interrogation_Position=2882; Antisense; GAGCTGACTGGTACTTGGCTTCCAT
>probe:Drosophila_2:1633369_s_at:76:49; Interrogation_Position=2910; Antisense; ATCCACCGGCGTTTTGCTGAAAGCT
>probe:Drosophila_2:1633369_s_at:328:173; Interrogation_Position=2929; Antisense; AAAGCTCTGGGCAATGTCAGCTCCT
>probe:Drosophila_2:1633369_s_at:256:717; Interrogation_Position=2968; Antisense; TTCGTCCTCAACATCCGAGAATCGG
>probe:Drosophila_2:1633369_s_at:505:129; Interrogation_Position=3067; Antisense; ACCATAGACAACTTACGCGTGCTGC
>probe:Drosophila_2:1633369_s_at:488:329; Interrogation_Position=3083; Antisense; GCGTGCTGCGCAAACAGTTCCTGAA
>probe:Drosophila_2:1633369_s_at:181:615; Interrogation_Position=3104; Antisense; TGAAGCAGTGCCTCAGCGAGCGTCT
>probe:Drosophila_2:1633369_s_at:715:87; Interrogation_Position=3161; Antisense; AGTCGCAGCTGGTGGTGACCCGCAT
>probe:Drosophila_2:1633369_s_at:87:89; Interrogation_Position=3251; Antisense; AGTCGCAGCGCTGGACGGAGTTTAT
>probe:Drosophila_2:1633369_s_at:443:529; Interrogation_Position=3276; Antisense; GGGTAACTCGGGACATGGCTTCTAT

Paste this into a BLAST search page for me
AGACGCGAGAGTGCTTCCGGAATCAGAATCACGACAACAGCGTCCGAGGAGATTCCGCTGGTGTTGAGGAGTCCTGAGGAGTCCTCCGTAGGAGCTGACTGAGCTGACTGGTACTTGGCTTCCATATCCACCGGCGTTTTGCTGAAAGCTAAAGCTCTGGGCAATGTCAGCTCCTTTCGTCCTCAACATCCGAGAATCGGACCATAGACAACTTACGCGTGCTGCGCGTGCTGCGCAAACAGTTCCTGAATGAAGCAGTGCCTCAGCGAGCGTCTAGTCGCAGCTGGTGGTGACCCGCATAGTCGCAGCGCTGGACGGAGTTTATGGGTAACTCGGGACATGGCTTCTAT

Full Affymetrix probeset data:

Annotations for 1633369_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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