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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633382_s_at:

>probe:Drosophila_2:1633382_s_at:654:125; Interrogation_Position=3448; Antisense; AGCCTTCACAACTGGCCATTGGAGA
>probe:Drosophila_2:1633382_s_at:226:305; Interrogation_Position=3486; Antisense; CCTGACTCCGAAGGCGTATATCATC
>probe:Drosophila_2:1633382_s_at:82:23; Interrogation_Position=3503; Antisense; ATATCATCGCGTAAGTATTCACAAG
>probe:Drosophila_2:1633382_s_at:11:459; Interrogation_Position=3539; Antisense; GATTATACACGTGCGTTTCGTCGAC
>probe:Drosophila_2:1633382_s_at:331:431; Interrogation_Position=3577; Antisense; GAGTAATTGCCTGTGATCAACTGAA
>probe:Drosophila_2:1633382_s_at:458:233; Interrogation_Position=3609; Antisense; AATCCGGAGTTAAGAAAGCTGCCCA
>probe:Drosophila_2:1633382_s_at:595:439; Interrogation_Position=3635; Antisense; GATGGCATTGCCAGCACAACTTTAT
>probe:Drosophila_2:1633382_s_at:255:681; Interrogation_Position=3657; Antisense; TATGGCAAGCATACAACTGACTGAT
>probe:Drosophila_2:1633382_s_at:313:225; Interrogation_Position=3694; Antisense; AAGGAGAACTGCGTCCGATTCCGGG
>probe:Drosophila_2:1633382_s_at:456:461; Interrogation_Position=3710; Antisense; GATTCCGGGAACTGTCGCTGGGTCA
>probe:Drosophila_2:1633382_s_at:455:689; Interrogation_Position=3828; Antisense; TATTAAGCTGCACGAGATTCTCATC
>probe:Drosophila_2:1633382_s_at:289:57; Interrogation_Position=3854; Antisense; ATGAGAAGCACGCACAGCCAGCAAC
>probe:Drosophila_2:1633382_s_at:328:477; Interrogation_Position=3925; Antisense; GTTTATGTTTGCGTAATCCTAGTTT
>probe:Drosophila_2:1633382_s_at:494:707; Interrogation_Position=3977; Antisense; TTACGACGAAACATTCCGCCAGATG

Paste this into a BLAST search page for me
AGCCTTCACAACTGGCCATTGGAGACCTGACTCCGAAGGCGTATATCATCATATCATCGCGTAAGTATTCACAAGGATTATACACGTGCGTTTCGTCGACGAGTAATTGCCTGTGATCAACTGAAAATCCGGAGTTAAGAAAGCTGCCCAGATGGCATTGCCAGCACAACTTTATTATGGCAAGCATACAACTGACTGATAAGGAGAACTGCGTCCGATTCCGGGGATTCCGGGAACTGTCGCTGGGTCATATTAAGCTGCACGAGATTCTCATCATGAGAAGCACGCACAGCCAGCAACGTTTATGTTTGCGTAATCCTAGTTTTTACGACGAAACATTCCGCCAGATG

Full Affymetrix probeset data:

Annotations for 1633382_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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