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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633452_a_at:

>probe:Drosophila_2:1633452_a_at:356:117; Interrogation_Position=15243; Antisense; AGCTGCGTGACCAACTGGAGTCGGT
>probe:Drosophila_2:1633452_a_at:333:193; Interrogation_Position=15287; Antisense; AACTGCTTCATCTGCGGGATGGGCA
>probe:Drosophila_2:1633452_a_at:696:73; Interrogation_Position=15312; Antisense; AGGACTTCTTCGACATAGTACCGCA
>probe:Drosophila_2:1633452_a_at:671:147; Interrogation_Position=15369; Antisense; ACTTAGCCAACTACATGTTCTTCCT
>probe:Drosophila_2:1633452_a_at:306:681; Interrogation_Position=15425; Antisense; TATACCGGCCAGGAGACGTACGTGT
>probe:Drosophila_2:1633452_a_at:548:585; Interrogation_Position=15449; Antisense; TGGAACATGTACCAGCAGCGCAGCT
>probe:Drosophila_2:1633452_a_at:210:85; Interrogation_Position=15487; Antisense; AGTGGGAGACTGCTTCCGCAAGCAA
>probe:Drosophila_2:1633452_a_at:618:27; Interrogation_Position=15511; Antisense; ATACGAGGATGAGCTTTCCGGCGGA
>probe:Drosophila_2:1633452_a_at:452:329; Interrogation_Position=15540; Antisense; GCGGCGGCTAAATGACTGCGGATTC
>probe:Drosophila_2:1633452_a_at:67:321; Interrogation_Position=15565; Antisense; GCCGCGTCTGATTTCTGGGCACAAT
>probe:Drosophila_2:1633452_a_at:663:593; Interrogation_Position=15580; Antisense; TGGGCACAATCACACTGGCACTAGA
>probe:Drosophila_2:1633452_a_at:619:583; Interrogation_Position=15595; Antisense; TGGCACTAGACGGTCCAAGGACTCT
>probe:Drosophila_2:1633452_a_at:95:405; Interrogation_Position=15614; Antisense; GACTCTCGGGATCCAATTTTGTATC
>probe:Drosophila_2:1633452_a_at:21:435; Interrogation_Position=15728; Antisense; GAGGAGTACGACCTGTTTCCAAACT

Paste this into a BLAST search page for me
AGCTGCGTGACCAACTGGAGTCGGTAACTGCTTCATCTGCGGGATGGGCAAGGACTTCTTCGACATAGTACCGCAACTTAGCCAACTACATGTTCTTCCTTATACCGGCCAGGAGACGTACGTGTTGGAACATGTACCAGCAGCGCAGCTAGTGGGAGACTGCTTCCGCAAGCAAATACGAGGATGAGCTTTCCGGCGGAGCGGCGGCTAAATGACTGCGGATTCGCCGCGTCTGATTTCTGGGCACAATTGGGCACAATCACACTGGCACTAGATGGCACTAGACGGTCCAAGGACTCTGACTCTCGGGATCCAATTTTGTATCGAGGAGTACGACCTGTTTCCAAACT

Full Affymetrix probeset data:

Annotations for 1633452_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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