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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633463_s_at:

>probe:Drosophila_2:1633463_s_at:144:131; Interrogation_Position=3545; Antisense; ACCCCGAGCATTCCCGAGTTTATAT
>probe:Drosophila_2:1633463_s_at:474:117; Interrogation_Position=3580; Antisense; AGCTATCTTTCTGTAAATCCCTTGA
>probe:Drosophila_2:1633463_s_at:706:637; Interrogation_Position=3638; Antisense; TCGTACGATGTGTTGCTTATTTTTT
>probe:Drosophila_2:1633463_s_at:432:437; Interrogation_Position=3667; Antisense; GAGGAGCGTTGCCAAATTACGTTTA
>probe:Drosophila_2:1633463_s_at:290:541; Interrogation_Position=3706; Antisense; GGATAACTTTGTGTTCTCTTTGAAA
>probe:Drosophila_2:1633463_s_at:238:235; Interrogation_Position=3730; Antisense; AATCCAAATCCGTTGCATTTCCTTT
>probe:Drosophila_2:1633463_s_at:606:343; Interrogation_Position=3744; Antisense; GCATTTCCTTTCGTTGGATTCTCAA
>probe:Drosophila_2:1633463_s_at:289:479; Interrogation_Position=3826; Antisense; GTTTCCAATCTACCGATATCACACG
>probe:Drosophila_2:1633463_s_at:119:1; Interrogation_Position=3872; Antisense; GCGTTAGGCCCTAGTAGTTAGACCT
>probe:Drosophila_2:1633463_s_at:366:87; Interrogation_Position=3913; Antisense; AGTGCCTTCTATTTATAACGGACGC
>probe:Drosophila_2:1633463_s_at:253:661; Interrogation_Position=3928; Antisense; TAACGGACGCATTCTTACACATATG
>probe:Drosophila_2:1633463_s_at:679:491; Interrogation_Position=3958; Antisense; GTAATCGTTCATCGAACTCTTGTAG
>probe:Drosophila_2:1633463_s_at:280:341; Interrogation_Position=3989; Antisense; GCTAGGTCACAATCACAGCGACTGT
>probe:Drosophila_2:1633463_s_at:155:665; Interrogation_Position=4029; Antisense; TACAATTTCATATCGCATCCTGCAG

Paste this into a BLAST search page for me
ACCCCGAGCATTCCCGAGTTTATATAGCTATCTTTCTGTAAATCCCTTGATCGTACGATGTGTTGCTTATTTTTTGAGGAGCGTTGCCAAATTACGTTTAGGATAACTTTGTGTTCTCTTTGAAAAATCCAAATCCGTTGCATTTCCTTTGCATTTCCTTTCGTTGGATTCTCAAGTTTCCAATCTACCGATATCACACGGCGTTAGGCCCTAGTAGTTAGACCTAGTGCCTTCTATTTATAACGGACGCTAACGGACGCATTCTTACACATATGGTAATCGTTCATCGAACTCTTGTAGGCTAGGTCACAATCACAGCGACTGTTACAATTTCATATCGCATCCTGCAG

Full Affymetrix probeset data:

Annotations for 1633463_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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