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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633501_s_at:

>probe:Drosophila_2:1633501_s_at:413:385; Interrogation_Position=2774; Antisense; GAACAGCCGGAAGTTGTCTCAGTCA
>probe:Drosophila_2:1633501_s_at:645:373; Interrogation_Position=2783; Antisense; GAAGTTGTCTCAGTCAAACCAATTT
>probe:Drosophila_2:1633501_s_at:253:381; Interrogation_Position=2843; Antisense; GAACCCAATGCTAGCTAGACCAGAA
>probe:Drosophila_2:1633501_s_at:239:273; Interrogation_Position=2918; Antisense; CATTAATAACGTATGCATCGCAGTT
>probe:Drosophila_2:1633501_s_at:348:347; Interrogation_Position=2932; Antisense; GCATCGCAGTTAATTGATACCTACA
>probe:Drosophila_2:1633501_s_at:150:13; Interrogation_Position=2997; Antisense; ATTAGTGTTCTCAATTCGTTTTATT
>probe:Drosophila_2:1633501_s_at:626:481; Interrogation_Position=3104; Antisense; GTATTGCTACTTTTAGTTCAACTAT
>probe:Drosophila_2:1633501_s_at:95:711; Interrogation_Position=3120; Antisense; TTCAACTATGCGTGCGTGCGTCCAA
>probe:Drosophila_2:1633501_s_at:377:623; Interrogation_Position=3136; Antisense; TGCGTCCAAGACCAATTCTCACATA
>probe:Drosophila_2:1633501_s_at:426:149; Interrogation_Position=3156; Antisense; ACATATAGTCTATTTGCCCCTTGGC
>probe:Drosophila_2:1633501_s_at:543:41; Interrogation_Position=3196; Antisense; ATCGGTCAACAACTTTTCCAGCGTG
>probe:Drosophila_2:1633501_s_at:688:719; Interrogation_Position=3211; Antisense; TTCCAGCGTGTTTACTGTTTTGTAA
>probe:Drosophila_2:1633501_s_at:517:491; Interrogation_Position=3232; Antisense; GTAAAGTTTCTTGTATTCATTGTCA
>probe:Drosophila_2:1633501_s_at:3:483; Interrogation_Position=3244; Antisense; GTATTCATTGTCATGTTTTCCATAA

Paste this into a BLAST search page for me
GAACAGCCGGAAGTTGTCTCAGTCAGAAGTTGTCTCAGTCAAACCAATTTGAACCCAATGCTAGCTAGACCAGAACATTAATAACGTATGCATCGCAGTTGCATCGCAGTTAATTGATACCTACAATTAGTGTTCTCAATTCGTTTTATTGTATTGCTACTTTTAGTTCAACTATTTCAACTATGCGTGCGTGCGTCCAATGCGTCCAAGACCAATTCTCACATAACATATAGTCTATTTGCCCCTTGGCATCGGTCAACAACTTTTCCAGCGTGTTCCAGCGTGTTTACTGTTTTGTAAGTAAAGTTTCTTGTATTCATTGTCAGTATTCATTGTCATGTTTTCCATAA

Full Affymetrix probeset data:

Annotations for 1633501_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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