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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633506_s_at:

>probe:Drosophila_2:1633506_s_at:649:89; Interrogation_Position=2098; Antisense; AGTAGCACCAGCTCGGTGGGACACA
>probe:Drosophila_2:1633506_s_at:15:595; Interrogation_Position=2114; Antisense; TGGGACACAGCGGTGGCAGTTCATC
>probe:Drosophila_2:1633506_s_at:609:119; Interrogation_Position=2148; Antisense; AGCTGCAAGCCAACGTTCGGGCAAG
>probe:Drosophila_2:1633506_s_at:235:223; Interrogation_Position=2170; Antisense; AAGGGATCCAAGTCTCAACGTCGCG
>probe:Drosophila_2:1633506_s_at:630:279; Interrogation_Position=2228; Antisense; CTCGCGAGACGACTTTGGCTAGCAA
>probe:Drosophila_2:1633506_s_at:323:315; Interrogation_Position=2257; Antisense; GCCGAGGCTTTAGAGGCTCCGCTGA
>probe:Drosophila_2:1633506_s_at:267:375; Interrogation_Position=2283; Antisense; GAAGAGTCCAAAGCGCGATTCAGCG
>probe:Drosophila_2:1633506_s_at:196:89; Interrogation_Position=2366; Antisense; AGTCGTCTCATTCGCCACAGAAGAA
>probe:Drosophila_2:1633506_s_at:383:519; Interrogation_Position=2392; Antisense; GTGGATAGCAAGTCACCTACGGAGC
>probe:Drosophila_2:1633506_s_at:602:99; Interrogation_Position=2417; Antisense; AGAGTTACTCTAGCTTTTATCAGGA
>probe:Drosophila_2:1633506_s_at:316:637; Interrogation_Position=2447; Antisense; TCGAGGCATCCTACGCCAATGAAGG
>probe:Drosophila_2:1633506_s_at:88:53; Interrogation_Position=2488; Antisense; ATGCTGCAGCAAGCCATCCAGATGT
>probe:Drosophila_2:1633506_s_at:546:673; Interrogation_Position=2563; Antisense; TAGACGGTGCCGCATGGAAACGCAT
>probe:Drosophila_2:1633506_s_at:702:175; Interrogation_Position=2580; Antisense; AAACGCATCGTTCTTTGTACAGTGA

Paste this into a BLAST search page for me
AGTAGCACCAGCTCGGTGGGACACATGGGACACAGCGGTGGCAGTTCATCAGCTGCAAGCCAACGTTCGGGCAAGAAGGGATCCAAGTCTCAACGTCGCGCTCGCGAGACGACTTTGGCTAGCAAGCCGAGGCTTTAGAGGCTCCGCTGAGAAGAGTCCAAAGCGCGATTCAGCGAGTCGTCTCATTCGCCACAGAAGAAGTGGATAGCAAGTCACCTACGGAGCAGAGTTACTCTAGCTTTTATCAGGATCGAGGCATCCTACGCCAATGAAGGATGCTGCAGCAAGCCATCCAGATGTTAGACGGTGCCGCATGGAAACGCATAAACGCATCGTTCTTTGTACAGTGA

Full Affymetrix probeset data:

Annotations for 1633506_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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