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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633524_a_at:

>probe:Drosophila_2:1633524_a_at:361:589; Interrogation_Position=1755; Antisense; TGGTCACTACCTGATTGTGCCTTCA
>probe:Drosophila_2:1633524_a_at:550:145; Interrogation_Position=1760; Antisense; ACTACCTGATTGTGCCTTCAACTTT
>probe:Drosophila_2:1633524_a_at:350:129; Interrogation_Position=1763; Antisense; ACCTGATTGTGCCTTCAACTTTCGA
>probe:Drosophila_2:1633524_a_at:662:603; Interrogation_Position=1766; Antisense; TGATTGTGCCTTCAACTTTCGATCC
>probe:Drosophila_2:1633524_a_at:260:725; Interrogation_Position=1769; Antisense; TTGTGCCTTCAACTTTCGATCCAAA
>probe:Drosophila_2:1633524_a_at:572:627; Interrogation_Position=1772; Antisense; TGCCTTCAACTTTCGATCCAAACGA
>probe:Drosophila_2:1633524_a_at:253:707; Interrogation_Position=1776; Antisense; TTCAACTTTCGATCCAAACGAGGAG
>probe:Drosophila_2:1633524_a_at:99:275; Interrogation_Position=1781; Antisense; CTTTCGATCCAAACGAGGAGGGAGA
>probe:Drosophila_2:1633524_a_at:564:75; Interrogation_Position=1796; Antisense; AGGAGGGAGAGTTCATCATTCGAGT
>probe:Drosophila_2:1633524_a_at:216:527; Interrogation_Position=1800; Antisense; GGGAGAGTTCATCATTCGAGTGTTC
>probe:Drosophila_2:1633524_a_at:335:429; Interrogation_Position=1804; Antisense; GAGTTCATCATTCGAGTGTTCTCAG
>probe:Drosophila_2:1633524_a_at:340:473; Interrogation_Position=1806; Antisense; GTTCATCATTCGAGTGTTCTCAGAA
>probe:Drosophila_2:1633524_a_at:514:37; Interrogation_Position=1810; Antisense; ATCATTCGAGTGTTCTCAGAAACTC
>probe:Drosophila_2:1633524_a_at:14:85; Interrogation_Position=1818; Antisense; AGTGTTCTCAGAAACTCAAAATAAC

Paste this into a BLAST search page for me
TGGTCACTACCTGATTGTGCCTTCAACTACCTGATTGTGCCTTCAACTTTACCTGATTGTGCCTTCAACTTTCGATGATTGTGCCTTCAACTTTCGATCCTTGTGCCTTCAACTTTCGATCCAAATGCCTTCAACTTTCGATCCAAACGATTCAACTTTCGATCCAAACGAGGAGCTTTCGATCCAAACGAGGAGGGAGAAGGAGGGAGAGTTCATCATTCGAGTGGGAGAGTTCATCATTCGAGTGTTCGAGTTCATCATTCGAGTGTTCTCAGGTTCATCATTCGAGTGTTCTCAGAAATCATTCGAGTGTTCTCAGAAACTCAGTGTTCTCAGAAACTCAAAATAAC

Full Affymetrix probeset data:

Annotations for 1633524_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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