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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633527_a_at:

>probe:Drosophila_2:1633527_a_at:511:117; Interrogation_Position=3432; Antisense; AGCTCCCTTCTACCTATTTGATGAG
>probe:Drosophila_2:1633527_a_at:429:453; Interrogation_Position=3460; Antisense; GATCAGGCGCTGGATGCAATGCATC
>probe:Drosophila_2:1633527_a_at:422:169; Interrogation_Position=3486; Antisense; AAAGGCGGTGGCGAACATGATCCAT
>probe:Drosophila_2:1633527_a_at:300:625; Interrogation_Position=3525; Antisense; TGCCCAGTTCATTACGACAACGTTC
>probe:Drosophila_2:1633527_a_at:290:293; Interrogation_Position=3545; Antisense; CGTTCCGGCCGGAATTGCTGGAGAA
>probe:Drosophila_2:1633527_a_at:627:215; Interrogation_Position=3577; Antisense; AAGTTCTACGGCGTGCGATTCCGAA
>probe:Drosophila_2:1633527_a_at:19:69; Interrogation_Position=3638; Antisense; AGGCCAAGGACTTCGTCGAGGACGA
>probe:Drosophila_2:1633527_a_at:253:641; Interrogation_Position=3726; Antisense; TCTCGCCCCAATTATTAGTTTCGTA
>probe:Drosophila_2:1633527_a_at:352:485; Interrogation_Position=3748; Antisense; GTAGGCGTACGATTTGTTTTCACAT
>probe:Drosophila_2:1633527_a_at:639:711; Interrogation_Position=3808; Antisense; TTCTTTCTAACGATACTTGCTACAT
>probe:Drosophila_2:1633527_a_at:426:425; Interrogation_Position=3851; Antisense; GAGAGTTAGTTTTCGGCTAGGCCGT
>probe:Drosophila_2:1633527_a_at:279:679; Interrogation_Position=3868; Antisense; TAGGCCGTGCTCGTTGCGTGGAACA
>probe:Drosophila_2:1633527_a_at:336:557; Interrogation_Position=3887; Antisense; GGAACACTTCGAGCCGGCGAACAAA
>probe:Drosophila_2:1633527_a_at:640:481; Interrogation_Position=3919; Antisense; GTATAGAAACTCCAAGCCCAGATCA

Paste this into a BLAST search page for me
AGCTCCCTTCTACCTATTTGATGAGGATCAGGCGCTGGATGCAATGCATCAAAGGCGGTGGCGAACATGATCCATTGCCCAGTTCATTACGACAACGTTCCGTTCCGGCCGGAATTGCTGGAGAAAAGTTCTACGGCGTGCGATTCCGAAAGGCCAAGGACTTCGTCGAGGACGATCTCGCCCCAATTATTAGTTTCGTAGTAGGCGTACGATTTGTTTTCACATTTCTTTCTAACGATACTTGCTACATGAGAGTTAGTTTTCGGCTAGGCCGTTAGGCCGTGCTCGTTGCGTGGAACAGGAACACTTCGAGCCGGCGAACAAAGTATAGAAACTCCAAGCCCAGATCA

Full Affymetrix probeset data:

Annotations for 1633527_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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