FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633558_s_at:

>probe:Drosophila_2:1633558_s_at:646:339; Interrogation_Position=1121; Antisense; GCTTTGTGGACGTCGACCAGTTGAC
>probe:Drosophila_2:1633558_s_at:263:129; Interrogation_Position=1136; Antisense; ACCAGTTGACGCTGCAGCACAACAA
>probe:Drosophila_2:1633558_s_at:224:197; Interrogation_Position=1168; Antisense; AACGTGTTCGCCATCGGCGATTCGG
>probe:Drosophila_2:1633558_s_at:626:321; Interrogation_Position=1231; Antisense; GCCCAATCACCGGTTGTGTTCAAAA
>probe:Drosophila_2:1633558_s_at:576:173; Interrogation_Position=1279; Antisense; AAAGCCCCAACGGATATCTACGATG
>probe:Drosophila_2:1633558_s_at:635:13; Interrogation_Position=1294; Antisense; ATCTACGATGGATACTCGTCCTGCC
>probe:Drosophila_2:1633558_s_at:12:307; Interrogation_Position=1340; Antisense; CCTGCATCCTGGCTGAGTTTGATTA
>probe:Drosophila_2:1633558_s_at:438:519; Interrogation_Position=1378; Antisense; GTGGAGACCTTTCCATTGGACCAGT
>probe:Drosophila_2:1633558_s_at:519:417; Interrogation_Position=1408; Antisense; GAGAGGTACTCCATGTTCTTTATGA
>probe:Drosophila_2:1633558_s_at:418:371; Interrogation_Position=1434; Antisense; GAAGGAGCTGATGCCGGTGCTCTAC
>probe:Drosophila_2:1633558_s_at:185:533; Interrogation_Position=1449; Antisense; GGTGCTCTACTGGAAGCTGATGATG
>probe:Drosophila_2:1633558_s_at:239:607; Interrogation_Position=1469; Antisense; TGATGAACGGCTACTGGAACGGACC
>probe:Drosophila_2:1633558_s_at:66:383; Interrogation_Position=1485; Antisense; GAACGGACCGGCACTAATGCGGAAA
>probe:Drosophila_2:1633558_s_at:218:569; Interrogation_Position=1586; Antisense; GGCATCATCATAACCATTCCATACC

Paste this into a BLAST search page for me
GCTTTGTGGACGTCGACCAGTTGACACCAGTTGACGCTGCAGCACAACAAAACGTGTTCGCCATCGGCGATTCGGGCCCAATCACCGGTTGTGTTCAAAAAAAGCCCCAACGGATATCTACGATGATCTACGATGGATACTCGTCCTGCCCCTGCATCCTGGCTGAGTTTGATTAGTGGAGACCTTTCCATTGGACCAGTGAGAGGTACTCCATGTTCTTTATGAGAAGGAGCTGATGCCGGTGCTCTACGGTGCTCTACTGGAAGCTGATGATGTGATGAACGGCTACTGGAACGGACCGAACGGACCGGCACTAATGCGGAAAGGCATCATCATAACCATTCCATACC

Full Affymetrix probeset data:

Annotations for 1633558_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720