FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633576_s_at:

>probe:Drosophila_2:1633576_s_at:326:135; Interrogation_Position=1579; Antisense; ACGCCCGTTCCTATTGATGTTTCTA
>probe:Drosophila_2:1633576_s_at:693:249; Interrogation_Position=1617; Antisense; CAATGATGTCAGCAAGCCCTTGGAA
>probe:Drosophila_2:1633576_s_at:415:661; Interrogation_Position=1647; Antisense; TACAACCTTGGTTAAGACTGCCGAC
>probe:Drosophila_2:1633576_s_at:44:407; Interrogation_Position=1662; Antisense; GACTGCCGACAGTCCTGCAAAGGAA
>probe:Drosophila_2:1633576_s_at:699:511; Interrogation_Position=1733; Antisense; GTGAGCCCAAGATCGTCAACAGTTC
>probe:Drosophila_2:1633576_s_at:378:233; Interrogation_Position=1774; Antisense; AATGCTGCGCCCAAAGTGTGTAACT
>probe:Drosophila_2:1633576_s_at:234:601; Interrogation_Position=1792; Antisense; TGTAACTAAACCAATCCCACCGATG
>probe:Drosophila_2:1633576_s_at:326:661; Interrogation_Position=1850; Antisense; TAAAAAAGCGTCTTCATCTCGCCCG
>probe:Drosophila_2:1633576_s_at:292:299; Interrogation_Position=1873; Antisense; CGCCGAGTTGGTCTGATGTTGCCAA
>probe:Drosophila_2:1633576_s_at:607:603; Interrogation_Position=1954; Antisense; TGATAACTTGATTTCGTACTCCGAA
>probe:Drosophila_2:1633576_s_at:633:723; Interrogation_Position=1990; Antisense; TTGATAATAGTTCGCGTCCTCCAGT
>probe:Drosophila_2:1633576_s_at:256:503; Interrogation_Position=2005; Antisense; GTCCTCCAGTATTTGGTTGACGCGA
>probe:Drosophila_2:1633576_s_at:319:411; Interrogation_Position=2032; Antisense; GACGCCATAGGCTGCAATCGATGCT
>probe:Drosophila_2:1633576_s_at:494:445; Interrogation_Position=2051; Antisense; GATGCTGGACTTTCAATGCTGCGGT

Paste this into a BLAST search page for me
ACGCCCGTTCCTATTGATGTTTCTACAATGATGTCAGCAAGCCCTTGGAATACAACCTTGGTTAAGACTGCCGACGACTGCCGACAGTCCTGCAAAGGAAGTGAGCCCAAGATCGTCAACAGTTCAATGCTGCGCCCAAAGTGTGTAACTTGTAACTAAACCAATCCCACCGATGTAAAAAAGCGTCTTCATCTCGCCCGCGCCGAGTTGGTCTGATGTTGCCAATGATAACTTGATTTCGTACTCCGAATTGATAATAGTTCGCGTCCTCCAGTGTCCTCCAGTATTTGGTTGACGCGAGACGCCATAGGCTGCAATCGATGCTGATGCTGGACTTTCAATGCTGCGGT

Full Affymetrix probeset data:

Annotations for 1633576_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720