FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633625_s_at:

>probe:Drosophila_2:1633625_s_at:359:639; Interrogation_Position=2765; Antisense; TCTGCTGACGTACGATCCGAAACAA
>probe:Drosophila_2:1633625_s_at:165:389; Interrogation_Position=2783; Antisense; GAAACAAAGACTGAGCGCCGACGCG
>probe:Drosophila_2:1633625_s_at:730:663; Interrogation_Position=2812; Antisense; TAAAGCACGGCTTCTTCAAGGAGCT
>probe:Drosophila_2:1633625_s_at:511:653; Interrogation_Position=2827; Antisense; TCAAGGAGCTGCCATTGCCCATCGA
>probe:Drosophila_2:1633625_s_at:367:533; Interrogation_Position=2934; Antisense; GGTGGCTCGCAGTTCAAGCAACTAG
>probe:Drosophila_2:1633625_s_at:588:473; Interrogation_Position=2945; Antisense; GTTCAAGCAACTAGGCCGCGACGAG
>probe:Drosophila_2:1633625_s_at:156:517; Interrogation_Position=2979; Antisense; GTGGGACCGGGAAACAAGCTCTCAT
>probe:Drosophila_2:1633625_s_at:512:207; Interrogation_Position=2994; Antisense; AAGCTCTCATCTGGGATTATCACTG
>probe:Drosophila_2:1633625_s_at:143:589; Interrogation_Position=3044; Antisense; TGGATCGTCGGCTAGCACGGGATTT
>probe:Drosophila_2:1633625_s_at:414:139; Interrogation_Position=3060; Antisense; ACGGGATTTGTCCTGAACGCTGGAA
>probe:Drosophila_2:1633625_s_at:657:307; Interrogation_Position=3103; Antisense; CCATGGGACCGGGATTCAGTCTGAA
>probe:Drosophila_2:1633625_s_at:244:471; Interrogation_Position=3128; Antisense; GTTCTGATTCTGTGTGTTTTAGCCC
>probe:Drosophila_2:1633625_s_at:122:477; Interrogation_Position=3143; Antisense; GTTTTAGCCCATTACGATTACGATT
>probe:Drosophila_2:1633625_s_at:10:239; Interrogation_Position=3278; Antisense; AATCATTTTTCACCTCAAGAGCGGC

Paste this into a BLAST search page for me
TCTGCTGACGTACGATCCGAAACAAGAAACAAAGACTGAGCGCCGACGCGTAAAGCACGGCTTCTTCAAGGAGCTTCAAGGAGCTGCCATTGCCCATCGAGGTGGCTCGCAGTTCAAGCAACTAGGTTCAAGCAACTAGGCCGCGACGAGGTGGGACCGGGAAACAAGCTCTCATAAGCTCTCATCTGGGATTATCACTGTGGATCGTCGGCTAGCACGGGATTTACGGGATTTGTCCTGAACGCTGGAACCATGGGACCGGGATTCAGTCTGAAGTTCTGATTCTGTGTGTTTTAGCCCGTTTTAGCCCATTACGATTACGATTAATCATTTTTCACCTCAAGAGCGGC

Full Affymetrix probeset data:

Annotations for 1633625_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720