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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633635_s_at:

>probe:Drosophila_2:1633635_s_at:197:695; Interrogation_Position=3239; Antisense; TTTCAAGGCGGAGCTAAAGGACATC
>probe:Drosophila_2:1633635_s_at:275:169; Interrogation_Position=3254; Antisense; AAAGGACATCATGCGCTTCTTTAGC
>probe:Drosophila_2:1633635_s_at:132:625; Interrogation_Position=3265; Antisense; TGCGCTTCTTTAGCGACTACAAGCT
>probe:Drosophila_2:1633635_s_at:702:205; Interrogation_Position=3285; Antisense; AAGCTTAGCCCGGATGACATTATAA
>probe:Drosophila_2:1633635_s_at:55:481; Interrogation_Position=3356; Antisense; TTTCGAGTCCCCTTCGGAGGCAAGG
>probe:Drosophila_2:1633635_s_at:557:437; Interrogation_Position=3372; Antisense; GAGGCAAGGTCTGCCTTCGAATCGC
>probe:Drosophila_2:1633635_s_at:705:367; Interrogation_Position=3390; Antisense; GAATCGCGCCGCAAGAAGCAGATAT
>probe:Drosophila_2:1633635_s_at:21:459; Interrogation_Position=3410; Antisense; GATATTTAACCGCACTGTCTACCTG
>probe:Drosophila_2:1633635_s_at:193:499; Interrogation_Position=3426; Antisense; GTCTACCTGGATATCATCTAGGCAA
>probe:Drosophila_2:1633635_s_at:330:37; Interrogation_Position=3441; Antisense; ATCTAGGCAATGAGCTTAGAGCCCA
>probe:Drosophila_2:1633635_s_at:89:699; Interrogation_Position=3582; Antisense; TTTAAGCATACAAAACCCAGCGAGC
>probe:Drosophila_2:1633635_s_at:216:327; Interrogation_Position=3601; Antisense; GCGAGCGACTGGGAAACTATCATTA
>probe:Drosophila_2:1633635_s_at:226:21; Interrogation_Position=3648; Antisense; ATATTTTGTTTCTGTGCATCCTTTC
>probe:Drosophila_2:1633635_s_at:128:509; Interrogation_Position=3661; Antisense; GTGCATCCTTTCTTTAGTCTTTTTA

Paste this into a BLAST search page for me
TTTCAAGGCGGAGCTAAAGGACATCAAAGGACATCATGCGCTTCTTTAGCTGCGCTTCTTTAGCGACTACAAGCTAAGCTTAGCCCGGATGACATTATAATTTCGAGTCCCCTTCGGAGGCAAGGGAGGCAAGGTCTGCCTTCGAATCGCGAATCGCGCCGCAAGAAGCAGATATGATATTTAACCGCACTGTCTACCTGGTCTACCTGGATATCATCTAGGCAAATCTAGGCAATGAGCTTAGAGCCCATTTAAGCATACAAAACCCAGCGAGCGCGAGCGACTGGGAAACTATCATTAATATTTTGTTTCTGTGCATCCTTTCGTGCATCCTTTCTTTAGTCTTTTTA

Full Affymetrix probeset data:

Annotations for 1633635_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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