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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633717_a_at:

>probe:Drosophila_2:1633717_a_at:595:523; Interrogation_Position=1999; Antisense; GGGAAGTTCGTCAAATCGCGTCAAC
>probe:Drosophila_2:1633717_a_at:15:653; Interrogation_Position=2019; Antisense; TCAACGCTTGGACTCGCACATGGAG
>probe:Drosophila_2:1633717_a_at:76:551; Interrogation_Position=2040; Antisense; GGAGAAAAAGCACGCCGCCAAACTA
>probe:Drosophila_2:1633717_a_at:225:193; Interrogation_Position=2060; Antisense; AACTACAGTGCACCCTATGCAAGGA
>probe:Drosophila_2:1633717_a_at:191:229; Interrogation_Position=2100; Antisense; AATGGATTACGTGGCTCACTTCTCG
>probe:Drosophila_2:1633717_a_at:169:649; Interrogation_Position=2115; Antisense; TCACTTCTCGAACTGTGGTTCCGAA
>probe:Drosophila_2:1633717_a_at:300:589; Interrogation_Position=2130; Antisense; TGGTTCCGAAGGTGGACTTCCATGC
>probe:Drosophila_2:1633717_a_at:300:721; Interrogation_Position=2147; Antisense; TTCCATGCGGCGTAGCCAATTGCAA
>probe:Drosophila_2:1633717_a_at:452:209; Interrogation_Position=2170; Antisense; AAGAAGGTCTTCACGGAGGCCAACT
>probe:Drosophila_2:1633717_a_at:13:623; Interrogation_Position=2210; Antisense; TGCGCAAGCGCCACTAGTTGCACTA
>probe:Drosophila_2:1633717_a_at:668:467; Interrogation_Position=2226; Antisense; GTTGCACTAGACTCCCTTTTATTTT
>probe:Drosophila_2:1633717_a_at:470:477; Interrogation_Position=2252; Antisense; GTTTTTCATTTCATTCTCTTGACCA
>probe:Drosophila_2:1633717_a_at:159:201; Interrogation_Position=2475; Antisense; AACCGCATTGGTTACACCACTTGTA
>probe:Drosophila_2:1633717_a_at:256:709; Interrogation_Position=2486; Antisense; TTACACCACTTGTACTCACCAAGAG

Paste this into a BLAST search page for me
GGGAAGTTCGTCAAATCGCGTCAACTCAACGCTTGGACTCGCACATGGAGGGAGAAAAAGCACGCCGCCAAACTAAACTACAGTGCACCCTATGCAAGGAAATGGATTACGTGGCTCACTTCTCGTCACTTCTCGAACTGTGGTTCCGAATGGTTCCGAAGGTGGACTTCCATGCTTCCATGCGGCGTAGCCAATTGCAAAAGAAGGTCTTCACGGAGGCCAACTTGCGCAAGCGCCACTAGTTGCACTAGTTGCACTAGACTCCCTTTTATTTTGTTTTTCATTTCATTCTCTTGACCAAACCGCATTGGTTACACCACTTGTATTACACCACTTGTACTCACCAAGAG

Full Affymetrix probeset data:

Annotations for 1633717_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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