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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633745_a_at:

>probe:Drosophila_2:1633745_a_at:361:9; Interrogation_Position=17285; Antisense; ATTCGAATGAAATGCCGCGGTCTCT
>probe:Drosophila_2:1633745_a_at:339:395; Interrogation_Position=17293; Antisense; GAAATGCCGCGGTCTCTGCTGCAAA
>probe:Drosophila_2:1633745_a_at:199:499; Interrogation_Position=17304; Antisense; GTCTCTGCTGCAAACCATCTTGAGT
>probe:Drosophila_2:1633745_a_at:140:617; Interrogation_Position=17312; Antisense; TGCAAACCATCTTGAGTCTCAGTTC
>probe:Drosophila_2:1633745_a_at:409:431; Interrogation_Position=17325; Antisense; GAGTCTCAGTTCTCCACTGGAATCG
>probe:Drosophila_2:1633745_a_at:237:585; Interrogation_Position=17342; Antisense; TGGAATCGCCAGTCCGGTGGAATTC
>probe:Drosophila_2:1633745_a_at:509:313; Interrogation_Position=17349; Antisense; GCCAGTCCGGTGGAATTCTAGCCAG
>probe:Drosophila_2:1633745_a_at:197:715; Interrogation_Position=17364; Antisense; TTCTAGCCAGGAGTGGCACGTGGCA
>probe:Drosophila_2:1633745_a_at:77:583; Interrogation_Position=17384; Antisense; TGGCAGAGGCGGAACGGCCAAAAAA
>probe:Drosophila_2:1633745_a_at:433:393; Interrogation_Position=17469; Antisense; GAAAGTGAAAATTGTAAGCCGCATA
>probe:Drosophila_2:1633745_a_at:389:195; Interrogation_Position=17549; Antisense; AACTGTTAAGCGACAAACACACACA
>probe:Drosophila_2:1633745_a_at:717:257; Interrogation_Position=17572; Antisense; CACACACACAGATTTTGTATTGCAT
>probe:Drosophila_2:1633745_a_at:180:649; Interrogation_Position=17625; Antisense; TCAGCGAATGAATTACGATGCAGAT
>probe:Drosophila_2:1633745_a_at:394:37; Interrogation_Position=17667; Antisense; ATCGAACCCGTTTCTATAAATACTG

Paste this into a BLAST search page for me
ATTCGAATGAAATGCCGCGGTCTCTGAAATGCCGCGGTCTCTGCTGCAAAGTCTCTGCTGCAAACCATCTTGAGTTGCAAACCATCTTGAGTCTCAGTTCGAGTCTCAGTTCTCCACTGGAATCGTGGAATCGCCAGTCCGGTGGAATTCGCCAGTCCGGTGGAATTCTAGCCAGTTCTAGCCAGGAGTGGCACGTGGCATGGCAGAGGCGGAACGGCCAAAAAAGAAAGTGAAAATTGTAAGCCGCATAAACTGTTAAGCGACAAACACACACACACACACACAGATTTTGTATTGCATTCAGCGAATGAATTACGATGCAGATATCGAACCCGTTTCTATAAATACTG

Full Affymetrix probeset data:

Annotations for 1633745_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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