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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633759_s_at:

>probe:Drosophila_2:1633759_s_at:196:151; Interrogation_Position=3752; Antisense; ACATTGAGGACTTCCGCGTGGTGGA
>probe:Drosophila_2:1633759_s_at:647:249; Interrogation_Position=3799; Antisense; CAAGGAGTGGGCAGCCTGAATCCAG
>probe:Drosophila_2:1633759_s_at:488:235; Interrogation_Position=3835; Antisense; AATCGCCACCGCAGTGTGTCGGAGA
>probe:Drosophila_2:1633759_s_at:59:641; Interrogation_Position=3853; Antisense; TCGGAGAGCGATGGCACAGCTGTAA
>probe:Drosophila_2:1633759_s_at:571:153; Interrogation_Position=3868; Antisense; ACAGCTGTAATTGCGGCCGGCGGTC
>probe:Drosophila_2:1633759_s_at:522:201; Interrogation_Position=3916; Antisense; AACCGCAGCGACTACGTGGGCAGGT
>probe:Drosophila_2:1633759_s_at:134:671; Interrogation_Position=3928; Antisense; TACGTGGGCAGGTTGCTGCAGCAAC
>probe:Drosophila_2:1633759_s_at:532:481; Interrogation_Position=3987; Antisense; GTATCAGCAGGGATACGGCGGCTAC
>probe:Drosophila_2:1633759_s_at:377:239; Interrogation_Position=4012; Antisense; AATCAGCAGCAAAACCGCAGGCGCA
>probe:Drosophila_2:1633759_s_at:402:319; Interrogation_Position=4092; Antisense; GCCGCAGGTGGCCAATCGCAATCAG
>probe:Drosophila_2:1633759_s_at:306:297; Interrogation_Position=4108; Antisense; CGCAATCAGGGATCGCAGCACGAGT
>probe:Drosophila_2:1633759_s_at:498:205; Interrogation_Position=4189; Antisense; AAGCCGAAGCCAGGAGCAGGATCAC
>probe:Drosophila_2:1633759_s_at:211:79; Interrogation_Position=4206; Antisense; AGGATCACAGACAGGCTCAACACGT
>probe:Drosophila_2:1633759_s_at:156:135; Interrogation_Position=4294; Antisense; ACGCCAGCGGTAACGGTATCTTCGG

Paste this into a BLAST search page for me
ACATTGAGGACTTCCGCGTGGTGGACAAGGAGTGGGCAGCCTGAATCCAGAATCGCCACCGCAGTGTGTCGGAGATCGGAGAGCGATGGCACAGCTGTAAACAGCTGTAATTGCGGCCGGCGGTCAACCGCAGCGACTACGTGGGCAGGTTACGTGGGCAGGTTGCTGCAGCAACGTATCAGCAGGGATACGGCGGCTACAATCAGCAGCAAAACCGCAGGCGCAGCCGCAGGTGGCCAATCGCAATCAGCGCAATCAGGGATCGCAGCACGAGTAAGCCGAAGCCAGGAGCAGGATCACAGGATCACAGACAGGCTCAACACGTACGCCAGCGGTAACGGTATCTTCGG

Full Affymetrix probeset data:

Annotations for 1633759_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime