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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633764_a_at:

>probe:Drosophila_2:1633764_a_at:694:179; Interrogation_Position=1495; Antisense; AAAACTCATTCACATGTAGCCCCAC
>probe:Drosophila_2:1633764_a_at:275:621; Interrogation_Position=1530; Antisense; TGCTGCCTTCGTCTTCGATTGGAAT
>probe:Drosophila_2:1633764_a_at:417:717; Interrogation_Position=1543; Antisense; TTCGATTGGAATCCGATCTCCGCAT
>probe:Drosophila_2:1633764_a_at:139:125; Interrogation_Position=1571; Antisense; AGCCTCATATGTAGTCCAGCATGCC
>probe:Drosophila_2:1633764_a_at:538:115; Interrogation_Position=1588; Antisense; AGCATGCCGCTTATGATCTCAAAGG
>probe:Drosophila_2:1633764_a_at:217:115; Interrogation_Position=1648; Antisense; AGCAGATAACCGTGCACTCCGTTGT
>probe:Drosophila_2:1633764_a_at:480:563; Interrogation_Position=1699; Antisense; GGAATTCCGATCTCGTAGGCGGCAA
>probe:Drosophila_2:1633764_a_at:336:183; Interrogation_Position=1722; Antisense; AAAAGCGTCCGCACAGCCTGGATAA
>probe:Drosophila_2:1633764_a_at:140:351; Interrogation_Position=1828; Antisense; GCACCCGATCGCTGTTCAATTAGAT
>probe:Drosophila_2:1633764_a_at:379:705; Interrogation_Position=1847; Antisense; TTAGATCGTTGGATGCGTCGACCTT
>probe:Drosophila_2:1633764_a_at:49:329; Interrogation_Position=1861; Antisense; GCGTCGACCTTATATCGGGACTTAC
>probe:Drosophila_2:1633764_a_at:227:557; Interrogation_Position=1878; Antisense; GGACTTACTACCCTTTTTGCGCAAT
>probe:Drosophila_2:1633764_a_at:76:393; Interrogation_Position=1956; Antisense; GAAAGTGGAATTGGCCTTGACCGGA
>probe:Drosophila_2:1633764_a_at:368:21; Interrogation_Position=1985; Antisense; ATATCACCTGACCATAGGCCTGTAG

Paste this into a BLAST search page for me
AAAACTCATTCACATGTAGCCCCACTGCTGCCTTCGTCTTCGATTGGAATTTCGATTGGAATCCGATCTCCGCATAGCCTCATATGTAGTCCAGCATGCCAGCATGCCGCTTATGATCTCAAAGGAGCAGATAACCGTGCACTCCGTTGTGGAATTCCGATCTCGTAGGCGGCAAAAAAGCGTCCGCACAGCCTGGATAAGCACCCGATCGCTGTTCAATTAGATTTAGATCGTTGGATGCGTCGACCTTGCGTCGACCTTATATCGGGACTTACGGACTTACTACCCTTTTTGCGCAATGAAAGTGGAATTGGCCTTGACCGGAATATCACCTGACCATAGGCCTGTAG

Full Affymetrix probeset data:

Annotations for 1633764_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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