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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633783_a_at:

>probe:Drosophila_2:1633783_a_at:77:317; Interrogation_Position=2144; Antisense; GCCTGCAGTCCCAGAACGGAGTGAA
>probe:Drosophila_2:1633783_a_at:230:229; Interrogation_Position=2176; Antisense; AATGGCAATGGGTCGCCGGAACTGC
>probe:Drosophila_2:1633783_a_at:530:33; Interrogation_Position=2257; Antisense; ATCAAGCCCATGACCGGAAACGCAG
>probe:Drosophila_2:1633783_a_at:554:565; Interrogation_Position=2320; Antisense; GGCAGCTTGGCCAAGGTCAGGCAAC
>probe:Drosophila_2:1633783_a_at:196:269; Interrogation_Position=2355; Antisense; CATGCGCAGTGCCAGCATTAGTGTG
>probe:Drosophila_2:1633783_a_at:415:83; Interrogation_Position=2374; Antisense; AGTGTGGGCGGATTCCGACCACCAG
>probe:Drosophila_2:1633783_a_at:559:447; Interrogation_Position=2419; Antisense; GATGCCGTCCAGATAAGATCCTCGC
>probe:Drosophila_2:1633783_a_at:619:283; Interrogation_Position=2503; Antisense; CTGCGACTGGGCACAGTGACCATTG
>probe:Drosophila_2:1633783_a_at:726:175; Interrogation_Position=2576; Antisense; AAACGAATGGAGAGCCCGCTTCCAA
>probe:Drosophila_2:1633783_a_at:60:593; Interrogation_Position=2601; Antisense; TGGGATCCTGAAGAACGGTAGCAAT
>probe:Drosophila_2:1633783_a_at:301:197; Interrogation_Position=2614; Antisense; AACGGTAGCAATCGGAGCAGCGCCA
>probe:Drosophila_2:1633783_a_at:207:553; Interrogation_Position=2627; Antisense; GGAGCAGCGCCAGCTTTAATCACGG
>probe:Drosophila_2:1633783_a_at:295:573; Interrogation_Position=2650; Antisense; GGCTCCTCCCATCAGACGGAAAAGA
>probe:Drosophila_2:1633783_a_at:337:559; Interrogation_Position=2667; Antisense; GGAAAAGACCATCAAGTTCGGCAAC

Paste this into a BLAST search page for me
GCCTGCAGTCCCAGAACGGAGTGAAAATGGCAATGGGTCGCCGGAACTGCATCAAGCCCATGACCGGAAACGCAGGGCAGCTTGGCCAAGGTCAGGCAACCATGCGCAGTGCCAGCATTAGTGTGAGTGTGGGCGGATTCCGACCACCAGGATGCCGTCCAGATAAGATCCTCGCCTGCGACTGGGCACAGTGACCATTGAAACGAATGGAGAGCCCGCTTCCAATGGGATCCTGAAGAACGGTAGCAATAACGGTAGCAATCGGAGCAGCGCCAGGAGCAGCGCCAGCTTTAATCACGGGGCTCCTCCCATCAGACGGAAAAGAGGAAAAGACCATCAAGTTCGGCAAC

Full Affymetrix probeset data:

Annotations for 1633783_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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