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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633792_a_at:

>probe:Drosophila_2:1633792_a_at:232:75; Interrogation_Position=10296; Antisense; AGGACTAATAACCACACATCCACAC
>probe:Drosophila_2:1633792_a_at:655:131; Interrogation_Position=10319; Antisense; ACCCACACCCAAAATGCTTGGCGTT
>probe:Drosophila_2:1633792_a_at:286:183; Interrogation_Position=10368; Antisense; AAAACCATACATGGGTGGGTGCACC
>probe:Drosophila_2:1633792_a_at:275:519; Interrogation_Position=10382; Antisense; GTGGGTGCACCAATTTGTATACTAA
>probe:Drosophila_2:1633792_a_at:331:483; Interrogation_Position=10398; Antisense; GTATACTAAACTTTCTCACACATAA
>probe:Drosophila_2:1633792_a_at:446:167; Interrogation_Position=10447; Antisense; AAATGAAATGTCTCCAGATTCTGGC
>probe:Drosophila_2:1633792_a_at:652:629; Interrogation_Position=10459; Antisense; TCCAGATTCTGGCATGAGCAAGTCT
>probe:Drosophila_2:1633792_a_at:496:603; Interrogation_Position=10473; Antisense; TGAGCAAGTCTAGAGGTCCTTCCGG
>probe:Drosophila_2:1633792_a_at:77:479; Interrogation_Position=10497; Antisense; GTTTCCGGTGGCGATCCTCTGGATC
>probe:Drosophila_2:1633792_a_at:459:641; Interrogation_Position=10514; Antisense; TCTGGATCCAGAGGAACTGCAAGAT
>probe:Drosophila_2:1633792_a_at:219:391; Interrogation_Position=10554; Antisense; GAAACTGCTGCTGTTGATACGTGTA
>probe:Drosophila_2:1633792_a_at:102:141; Interrogation_Position=10572; Antisense; ACGTGTATTCGTGTAGTTGTTTGCA
>probe:Drosophila_2:1633792_a_at:431:145; Interrogation_Position=10610; Antisense; ACTCAGCATCTCGATATATAACGTG
>probe:Drosophila_2:1633792_a_at:187:491; Interrogation_Position=10663; Antisense; GTAAATGTATGTCCCTCAAACTTAA

Paste this into a BLAST search page for me
AGGACTAATAACCACACATCCACACACCCACACCCAAAATGCTTGGCGTTAAAACCATACATGGGTGGGTGCACCGTGGGTGCACCAATTTGTATACTAAGTATACTAAACTTTCTCACACATAAAAATGAAATGTCTCCAGATTCTGGCTCCAGATTCTGGCATGAGCAAGTCTTGAGCAAGTCTAGAGGTCCTTCCGGGTTTCCGGTGGCGATCCTCTGGATCTCTGGATCCAGAGGAACTGCAAGATGAAACTGCTGCTGTTGATACGTGTAACGTGTATTCGTGTAGTTGTTTGCAACTCAGCATCTCGATATATAACGTGGTAAATGTATGTCCCTCAAACTTAA

Full Affymetrix probeset data:

Annotations for 1633792_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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