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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633799_a_at:

>probe:Drosophila_2:1633799_a_at:362:231; Interrogation_Position=1706; Antisense; AATGCACCCTGTCTTATATTTCTAG
>probe:Drosophila_2:1633799_a_at:670:341; Interrogation_Position=1744; Antisense; GCTTGTTGGCAGAAGGACGGTCTCA
>probe:Drosophila_2:1633799_a_at:392:93; Interrogation_Position=1789; Antisense; AGTTCAGCTGAGGATTCTCTCCACG
>probe:Drosophila_2:1633799_a_at:386:641; Interrogation_Position=1806; Antisense; TCTCCACGCTGTTGACCGAAATGAA
>probe:Drosophila_2:1633799_a_at:207:23; Interrogation_Position=1860; Antisense; ATATACTTGTCGTTGCAGCCACCAA
>probe:Drosophila_2:1633799_a_at:266:25; Interrogation_Position=1893; Antisense; ATATGATCGATGATGCCCTACTGCG
>probe:Drosophila_2:1633799_a_at:360:325; Interrogation_Position=1915; Antisense; GCGACCAGGACGCTTTGACAAGCTT
>probe:Drosophila_2:1633799_a_at:286:57; Interrogation_Position=1944; Antisense; ATGTACCAGCCCCAGATGAGAAATC
>probe:Drosophila_2:1633799_a_at:523:261; Interrogation_Position=1997; Antisense; CAGCGCATGCCTTTCCATGAAAATG
>probe:Drosophila_2:1633799_a_at:274:465; Interrogation_Position=2035; Antisense; GATTGCTGCCCGAACAGACCGGTAT
>probe:Drosophila_2:1633799_a_at:56:555; Interrogation_Position=2063; Antisense; GGAGCGGATCTGTGTAATCTCTGCA
>probe:Drosophila_2:1633799_a_at:359:39; Interrogation_Position=2079; Antisense; ATCTCTGCAATGAGGCGGCTATCGA
>probe:Drosophila_2:1633799_a_at:134:571; Interrogation_Position=2095; Antisense; GGCTATCGAGGCTTTTCAACGTGAC
>probe:Drosophila_2:1633799_a_at:597:209; Interrogation_Position=2168; Antisense; AAGCAGAAATCCTCGCTCACTCAAA

Paste this into a BLAST search page for me
AATGCACCCTGTCTTATATTTCTAGGCTTGTTGGCAGAAGGACGGTCTCAAGTTCAGCTGAGGATTCTCTCCACGTCTCCACGCTGTTGACCGAAATGAAATATACTTGTCGTTGCAGCCACCAAATATGATCGATGATGCCCTACTGCGGCGACCAGGACGCTTTGACAAGCTTATGTACCAGCCCCAGATGAGAAATCCAGCGCATGCCTTTCCATGAAAATGGATTGCTGCCCGAACAGACCGGTATGGAGCGGATCTGTGTAATCTCTGCAATCTCTGCAATGAGGCGGCTATCGAGGCTATCGAGGCTTTTCAACGTGACAAGCAGAAATCCTCGCTCACTCAAA

Full Affymetrix probeset data:

Annotations for 1633799_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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