FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633801_s_at:

>probe:Drosophila_2:1633801_s_at:166:157; Interrogation_Position=2252; Antisense; ACACTAGGACCTTTCATTTCTTCTG
>probe:Drosophila_2:1633801_s_at:497:273; Interrogation_Position=2266; Antisense; CATTTCTTCTGTTCTCTGGACATAA
>probe:Drosophila_2:1633801_s_at:645:145; Interrogation_Position=2285; Antisense; ACATAAGCGGCCAGAGACCTGGGTT
>probe:Drosophila_2:1633801_s_at:687:419; Interrogation_Position=2298; Antisense; GAGACCTGGGTTATGCGGTGTCCAC
>probe:Drosophila_2:1633801_s_at:285:515; Interrogation_Position=2315; Antisense; GTGTCCACCACTCATAGGCAGTCAT
>probe:Drosophila_2:1633801_s_at:395:679; Interrogation_Position=2329; Antisense; TAGGCAGTCATTATCAGTTACTTTT
>probe:Drosophila_2:1633801_s_at:310:265; Interrogation_Position=2343; Antisense; CAGTTACTTTTAGTCTAGGCCATAA
>probe:Drosophila_2:1633801_s_at:285:111; Interrogation_Position=2476; Antisense; AGCAACATTATTTTCGTATACCGGG
>probe:Drosophila_2:1633801_s_at:80:525; Interrogation_Position=2499; Antisense; GGGCGAGTTTCCTAGACATCAGCAA
>probe:Drosophila_2:1633801_s_at:18:257; Interrogation_Position=2526; Antisense; CAAACAGTCTTACCACTTTTTTGTG
>probe:Drosophila_2:1633801_s_at:472:21; Interrogation_Position=2555; Antisense; ATATATTTCCGCATTAAAGGCATAG
>probe:Drosophila_2:1633801_s_at:217:699; Interrogation_Position=2591; Antisense; TTTTTTGGGCAATGTAGACTTACTG
>probe:Drosophila_2:1633801_s_at:403:485; Interrogation_Position=2604; Antisense; GTAGACTTACTGCAAAGACCAAAAT
>probe:Drosophila_2:1633801_s_at:268:667; Interrogation_Position=2630; Antisense; TAGATTAGACCGATACCGGGCCAAA

Paste this into a BLAST search page for me
ACACTAGGACCTTTCATTTCTTCTGCATTTCTTCTGTTCTCTGGACATAAACATAAGCGGCCAGAGACCTGGGTTGAGACCTGGGTTATGCGGTGTCCACGTGTCCACCACTCATAGGCAGTCATTAGGCAGTCATTATCAGTTACTTTTCAGTTACTTTTAGTCTAGGCCATAAAGCAACATTATTTTCGTATACCGGGGGGCGAGTTTCCTAGACATCAGCAACAAACAGTCTTACCACTTTTTTGTGATATATTTCCGCATTAAAGGCATAGTTTTTTGGGCAATGTAGACTTACTGGTAGACTTACTGCAAAGACCAAAATTAGATTAGACCGATACCGGGCCAAA

Full Affymetrix probeset data:

Annotations for 1633801_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720