FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633805_a_at:

>probe:Drosophila_2:1633805_a_at:116:463; Interrogation_Position=1846; Antisense; GATTCATTCATTGACATACCCTGCA
>probe:Drosophila_2:1633805_a_at:583:27; Interrogation_Position=1861; Antisense; ATACCCTGCATTTCACACTATTAGT
>probe:Drosophila_2:1633805_a_at:360:117; Interrogation_Position=1905; Antisense; AGCTAAGCCAAGATCCTGCGTGTTG
>probe:Drosophila_2:1633805_a_at:345:49; Interrogation_Position=1951; Antisense; AGACCCTTGGGAGCTTATAGTTATA
>probe:Drosophila_2:1633805_a_at:536:465; Interrogation_Position=2008; Antisense; GATTGACTTTATCGTTTCCGTTCCA
>probe:Drosophila_2:1633805_a_at:300:415; Interrogation_Position=2037; Antisense; GAGCCTAGCCTGAAAAGGGTGCCTT
>probe:Drosophila_2:1633805_a_at:407:527; Interrogation_Position=2053; Antisense; GGGTGCCTTTGAAATTGCCTTAAGT
>probe:Drosophila_2:1633805_a_at:9:635; Interrogation_Position=2089; Antisense; TCGACTCTAATGTATGTTCTTGGGA
>probe:Drosophila_2:1633805_a_at:551:467; Interrogation_Position=2128; Antisense; GTTGTCATTTCACTATTTACCATTA
>probe:Drosophila_2:1633805_a_at:106:275; Interrogation_Position=2155; Antisense; CATTGTTCATCAAGTGCCATTTGCA
>probe:Drosophila_2:1633805_a_at:79:209; Interrogation_Position=2207; Antisense; AAGCTCACTCTTTGAACTTTACACT
>probe:Drosophila_2:1633805_a_at:600:193; Interrogation_Position=2240; Antisense; AACTCTAGAACTTGTCCATGCTATG
>probe:Drosophila_2:1633805_a_at:83:129; Interrogation_Position=2282; Antisense; ACCACCAACTGACTTGCTATCTTAG
>probe:Drosophila_2:1633805_a_at:463:679; Interrogation_Position=2320; Antisense; TAGGACTTAGATACCCACGCATAGA

Paste this into a BLAST search page for me
GATTCATTCATTGACATACCCTGCAATACCCTGCATTTCACACTATTAGTAGCTAAGCCAAGATCCTGCGTGTTGAGACCCTTGGGAGCTTATAGTTATAGATTGACTTTATCGTTTCCGTTCCAGAGCCTAGCCTGAAAAGGGTGCCTTGGGTGCCTTTGAAATTGCCTTAAGTTCGACTCTAATGTATGTTCTTGGGAGTTGTCATTTCACTATTTACCATTACATTGTTCATCAAGTGCCATTTGCAAAGCTCACTCTTTGAACTTTACACTAACTCTAGAACTTGTCCATGCTATGACCACCAACTGACTTGCTATCTTAGTAGGACTTAGATACCCACGCATAGA

Full Affymetrix probeset data:

Annotations for 1633805_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720