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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633855_s_at:

>probe:Drosophila_2:1633855_s_at:620:565; Interrogation_Position=5427; Antisense; GGCAATAATGCGACTGGCGGTCAGA
>probe:Drosophila_2:1633855_s_at:499:649; Interrogation_Position=5447; Antisense; TCAGAAGAAGCACGCGCAACGGTCT
>probe:Drosophila_2:1633855_s_at:521:197; Interrogation_Position=5464; Antisense; AACGGTCTCAACAGGCGGCGCAGGA
>probe:Drosophila_2:1633855_s_at:725:551; Interrogation_Position=5513; Antisense; GGAGAACTGCCACAAGCCAACCGGG
>probe:Drosophila_2:1633855_s_at:433:613; Interrogation_Position=5571; Antisense; TGCAACGAATGGTTCCACATGTACT
>probe:Drosophila_2:1633855_s_at:412:153; Interrogation_Position=5587; Antisense; ACATGTACTGTGTGGGCCTCAATCG
>probe:Drosophila_2:1633855_s_at:401:235; Interrogation_Position=5607; Antisense; AATCGCAGCCAGATAAAGCCCGACG
>probe:Drosophila_2:1633855_s_at:389:125; Interrogation_Position=5623; Antisense; AGCCCGACGACGACTATATCTGCAT
>probe:Drosophila_2:1633855_s_at:504:211; Interrogation_Position=5658; Antisense; AAGACAGTTGCCATCGGAACACAGG
>probe:Drosophila_2:1633855_s_at:260:387; Interrogation_Position=5674; Antisense; GAACACAGGGCTCCGGTCACAGTAT
>probe:Drosophila_2:1633855_s_at:454:495; Interrogation_Position=5689; Antisense; GTCACAGTATGAGCGTGGCGTCCAC
>probe:Drosophila_2:1633855_s_at:229:363; Interrogation_Position=5741; Antisense; GCAATCGGCGCGGTAGAGTAACGTA
>probe:Drosophila_2:1633855_s_at:258:309; Interrogation_Position=5774; Antisense; CCAGGAGGTGCAGTAACAGCCGATT
>probe:Drosophila_2:1633855_s_at:39:263; Interrogation_Position=5790; Antisense; CAGCCGATTGTGTTTTACGCATGAT

Paste this into a BLAST search page for me
GGCAATAATGCGACTGGCGGTCAGATCAGAAGAAGCACGCGCAACGGTCTAACGGTCTCAACAGGCGGCGCAGGAGGAGAACTGCCACAAGCCAACCGGGTGCAACGAATGGTTCCACATGTACTACATGTACTGTGTGGGCCTCAATCGAATCGCAGCCAGATAAAGCCCGACGAGCCCGACGACGACTATATCTGCATAAGACAGTTGCCATCGGAACACAGGGAACACAGGGCTCCGGTCACAGTATGTCACAGTATGAGCGTGGCGTCCACGCAATCGGCGCGGTAGAGTAACGTACCAGGAGGTGCAGTAACAGCCGATTCAGCCGATTGTGTTTTACGCATGAT

Full Affymetrix probeset data:

Annotations for 1633855_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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