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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633885_s_at:

>probe:Drosophila_2:1633885_s_at:718:327; Interrogation_Position=1034; Antisense; GCGTCGCACGCAGTTTCGAGGTAGA
>probe:Drosophila_2:1633885_s_at:432:675; Interrogation_Position=1055; Antisense; TAGAACTGGCCCGTTTGGGTCAGCC
>probe:Drosophila_2:1633885_s_at:220:489; Interrogation_Position=1073; Antisense; GTCAGCCGGAGAGCTACTTCCTTAG
>probe:Drosophila_2:1633885_s_at:288:205; Interrogation_Position=1120; Antisense; AAGCGTGACTTCATGGCCAAGTTCC
>probe:Drosophila_2:1633885_s_at:105:533; Interrogation_Position=1179; Antisense; GGGTGGCTACTTTATGCTGGCAGAC
>probe:Drosophila_2:1633885_s_at:269:105; Interrogation_Position=1200; Antisense; AGACTGGTCACCACTGGCGGGCAAG
>probe:Drosophila_2:1633885_s_at:615:215; Interrogation_Position=1222; Antisense; AAGATTGATCTAAGCTCTGAGCCAG
>probe:Drosophila_2:1633885_s_at:671:607; Interrogation_Position=1239; Antisense; TGAGCCAGACAAGCATCGGGATTAC
>probe:Drosophila_2:1633885_s_at:73:189; Interrogation_Position=1288; Antisense; AACATGGGCTTGCAGGGCATACCGC
>probe:Drosophila_2:1633885_s_at:392:597; Interrogation_Position=1359; Antisense; TGTGCGCTACTGCTTCATCAAGAAG
>probe:Drosophila_2:1633885_s_at:132:593; Interrogation_Position=880; Antisense; TGGGATCGCACCATTACTCTGGGAT
>probe:Drosophila_2:1633885_s_at:420:121; Interrogation_Position=906; Antisense; AGCGGGCAAGACCTTCTCAGTAACT
>probe:Drosophila_2:1633885_s_at:422:141; Interrogation_Position=953; Antisense; ACGGACCCGCTGAACTGATTCGAAA
>probe:Drosophila_2:1633885_s_at:58:35; Interrogation_Position=992; Antisense; ATCAGAACTCTGTGTACACCTGTCC

Paste this into a BLAST search page for me
GCGTCGCACGCAGTTTCGAGGTAGATAGAACTGGCCCGTTTGGGTCAGCCGTCAGCCGGAGAGCTACTTCCTTAGAAGCGTGACTTCATGGCCAAGTTCCGGGTGGCTACTTTATGCTGGCAGACAGACTGGTCACCACTGGCGGGCAAGAAGATTGATCTAAGCTCTGAGCCAGTGAGCCAGACAAGCATCGGGATTACAACATGGGCTTGCAGGGCATACCGCTGTGCGCTACTGCTTCATCAAGAAGTGGGATCGCACCATTACTCTGGGATAGCGGGCAAGACCTTCTCAGTAACTACGGACCCGCTGAACTGATTCGAAAATCAGAACTCTGTGTACACCTGTCC

Full Affymetrix probeset data:

Annotations for 1633885_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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