FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633894_a_at:

>probe:Drosophila_2:1633894_a_at:344:655; Interrogation_Position=3148; Antisense; TAATGTCTACGATCGCACGGGAGTT
>probe:Drosophila_2:1633894_a_at:344:595; Interrogation_Position=3211; Antisense; TGTGGGCTATCCAATGCTGGGAGAC
>probe:Drosophila_2:1633894_a_at:523:593; Interrogation_Position=3228; Antisense; TGGGAGACGATACCAAGAGCGTCCT
>probe:Drosophila_2:1633894_a_at:107:65; Interrogation_Position=3263; Antisense; ATGGGCGGCATGATGCAGCAAATGC
>probe:Drosophila_2:1633894_a_at:709:351; Interrogation_Position=3277; Antisense; GCAGCAAATGCCACCGCACGGGCAG
>probe:Drosophila_2:1633894_a_at:540:567; Interrogation_Position=3297; Antisense; GGCAGCAGCCGGATCTAATCTACTA
>probe:Drosophila_2:1633894_a_at:395:545; Interrogation_Position=3307; Antisense; GGATCTAATCTACTACCCAGTGAAG
>probe:Drosophila_2:1633894_a_at:538:671; Interrogation_Position=3320; Antisense; TACCCAGTGAAGAACGATTGACAGT
>probe:Drosophila_2:1633894_a_at:567:501; Interrogation_Position=3343; Antisense; GTCGAAGCAACATCAACAGGCCCAG
>probe:Drosophila_2:1633894_a_at:471:311; Interrogation_Position=3410; Antisense; GCCAAGAGAGGCGATGTTTTTCATT
>probe:Drosophila_2:1633894_a_at:405:139; Interrogation_Position=3473; Antisense; ACGGAACAAGTTCGCTTAGATTGTA
>probe:Drosophila_2:1633894_a_at:716:455; Interrogation_Position=3543; Antisense; GATAGGGCAGTCCACACATTATTTT
>probe:Drosophila_2:1633894_a_at:640:649; Interrogation_Position=3612; Antisense; TCAGAATATCTAATCCGACCGGCGC
>probe:Drosophila_2:1633894_a_at:690:295; Interrogation_Position=3627; Antisense; CGACCGGCGCTATGATACGTGTATA

Paste this into a BLAST search page for me
TAATGTCTACGATCGCACGGGAGTTTGTGGGCTATCCAATGCTGGGAGACTGGGAGACGATACCAAGAGCGTCCTATGGGCGGCATGATGCAGCAAATGCGCAGCAAATGCCACCGCACGGGCAGGGCAGCAGCCGGATCTAATCTACTAGGATCTAATCTACTACCCAGTGAAGTACCCAGTGAAGAACGATTGACAGTGTCGAAGCAACATCAACAGGCCCAGGCCAAGAGAGGCGATGTTTTTCATTACGGAACAAGTTCGCTTAGATTGTAGATAGGGCAGTCCACACATTATTTTTCAGAATATCTAATCCGACCGGCGCCGACCGGCGCTATGATACGTGTATA

Full Affymetrix probeset data:

Annotations for 1633894_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720