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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633918_s_at:

>probe:Drosophila_2:1633918_s_at:18:45; Interrogation_Position=2114; Antisense; ATCCCTAAAAGTCCCAGCCAAATCT
>probe:Drosophila_2:1633918_s_at:500:165; Interrogation_Position=2133; Antisense; AAATCTCAACCAGTTGCGCCTGCAG
>probe:Drosophila_2:1633918_s_at:124:351; Interrogation_Position=2154; Antisense; GCAGTTGTGCAACGCTCGAATTCAA
>probe:Drosophila_2:1633918_s_at:100:507; Interrogation_Position=2209; Antisense; GTGCCTGCTAAGAAATGCTCTTCAG
>probe:Drosophila_2:1633918_s_at:192:619; Interrogation_Position=2224; Antisense; TGCTCTTCAGCTTTTCTCCTAAAAA
>probe:Drosophila_2:1633918_s_at:82:1; Interrogation_Position=2281; Antisense; GCCCGAATTTTTCTAGTTAGGCATT
>probe:Drosophila_2:1633918_s_at:247:613; Interrogation_Position=2307; Antisense; TGCTAAATACCTTTTGACCTTTTTG
>probe:Drosophila_2:1633918_s_at:43:475; Interrogation_Position=2331; Antisense; GTTACTTGTCCAAAGGCAGCGTTCA
>probe:Drosophila_2:1633918_s_at:411:121; Interrogation_Position=2348; Antisense; AGCGTTCATTCATCCCATTACAGAC
>probe:Drosophila_2:1633918_s_at:458:399; Interrogation_Position=2370; Antisense; GACATGCATACACATTCATCACTCG
>probe:Drosophila_2:1633918_s_at:620:159; Interrogation_Position=2458; Antisense; ACAAAATATGTTTGCATCCGCCGCC
>probe:Drosophila_2:1633918_s_at:499:629; Interrogation_Position=2497; Antisense; TCCGTTTTTCCAATTCGCACACGAA
>probe:Drosophila_2:1633918_s_at:345:497; Interrogation_Position=2544; Antisense; GTCAGGGTAACATCATCACGTAACT
>probe:Drosophila_2:1633918_s_at:691:421; Interrogation_Position=2657; Antisense; GAGAACATTTCGTTTTGCTACTTAA

Paste this into a BLAST search page for me
ATCCCTAAAAGTCCCAGCCAAATCTAAATCTCAACCAGTTGCGCCTGCAGGCAGTTGTGCAACGCTCGAATTCAAGTGCCTGCTAAGAAATGCTCTTCAGTGCTCTTCAGCTTTTCTCCTAAAAAGCCCGAATTTTTCTAGTTAGGCATTTGCTAAATACCTTTTGACCTTTTTGGTTACTTGTCCAAAGGCAGCGTTCAAGCGTTCATTCATCCCATTACAGACGACATGCATACACATTCATCACTCGACAAAATATGTTTGCATCCGCCGCCTCCGTTTTTCCAATTCGCACACGAAGTCAGGGTAACATCATCACGTAACTGAGAACATTTCGTTTTGCTACTTAA

Full Affymetrix probeset data:

Annotations for 1633918_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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