FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633919_s_at:

>probe:Drosophila_2:1633919_s_at:730:477; Interrogation_Position=2094; Antisense; GTTTCAGGCAGCAAACCTTCAGGGT
>probe:Drosophila_2:1633919_s_at:170:709; Interrogation_Position=2203; Antisense; TTACTGGCACCAAAGCTTCAGGATT
>probe:Drosophila_2:1633919_s_at:86:541; Interrogation_Position=2241; Antisense; GGTTCTGGCCGTGGAAGTGCCTCAA
>probe:Drosophila_2:1633919_s_at:218:507; Interrogation_Position=2257; Antisense; GTGCCTCAAGTGCAACGGGTGATCT
>probe:Drosophila_2:1633919_s_at:413:29; Interrogation_Position=2298; Antisense; ATACTGGACTACAATGGACACGAGG
>probe:Drosophila_2:1633919_s_at:526:129; Interrogation_Position=2325; Antisense; ACCGGCGGTCGCAATGGTGACAAGC
>probe:Drosophila_2:1633919_s_at:643:81; Interrogation_Position=2350; Antisense; AGGGTAGCTACTTTGCAATCGGCGA
>probe:Drosophila_2:1633919_s_at:174:617; Interrogation_Position=2378; Antisense; TGCAGTGCAGCGGACCATTGAGTAT
>probe:Drosophila_2:1633919_s_at:592:381; Interrogation_Position=2408; Antisense; GAACGAGTTTGGATTCCAGCCCCAC
>probe:Drosophila_2:1633919_s_at:433:123; Interrogation_Position=2425; Antisense; AGCCCCACGTCAGCTGGCGGAAATT
>probe:Drosophila_2:1633919_s_at:23:365; Interrogation_Position=2477; Antisense; GAATTCACTGAAGCACTACGAGTTT
>probe:Drosophila_2:1633919_s_at:656:511; Interrogation_Position=2533; Antisense; GTGATTTTCCGGTGGATTATTCCAA
>probe:Drosophila_2:1633919_s_at:210:147; Interrogation_Position=2558; Antisense; GACTAGAGTAGGCACCTCTTTTCCC
>probe:Drosophila_2:1633919_s_at:331:277; Interrogation_Position=2575; Antisense; CTTTTCCCCATGCTGTACATAACAA

Paste this into a BLAST search page for me
GTTTCAGGCAGCAAACCTTCAGGGTTTACTGGCACCAAAGCTTCAGGATTGGTTCTGGCCGTGGAAGTGCCTCAAGTGCCTCAAGTGCAACGGGTGATCTATACTGGACTACAATGGACACGAGGACCGGCGGTCGCAATGGTGACAAGCAGGGTAGCTACTTTGCAATCGGCGATGCAGTGCAGCGGACCATTGAGTATGAACGAGTTTGGATTCCAGCCCCACAGCCCCACGTCAGCTGGCGGAAATTGAATTCACTGAAGCACTACGAGTTTGTGATTTTCCGGTGGATTATTCCAAGACTAGAGTAGGCACCTCTTTTCCCCTTTTCCCCATGCTGTACATAACAA

Full Affymetrix probeset data:

Annotations for 1633919_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720