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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633962_a_at:

>probe:Drosophila_2:1633962_a_at:281:523; Interrogation_Position=1706; Antisense; GGGCTTCATCCGTGTGCGTTACAAC
>probe:Drosophila_2:1633962_a_at:701:289; Interrogation_Position=1730; Antisense; CGTGGGCGTATGTTGCATGAACCTT
>probe:Drosophila_2:1633962_a_at:28:563; Interrogation_Position=1766; Antisense; GGAAGCTGTGGAGCACTTACTCACA
>probe:Drosophila_2:1633962_a_at:439:707; Interrogation_Position=1782; Antisense; TTACTCACAGCGCTTACCATGCAGG
>probe:Drosophila_2:1633962_a_at:314:327; Interrogation_Position=1842; Antisense; GCGATGGCGGCTACCTTTAGAGGAC
>probe:Drosophila_2:1633962_a_at:453:155; Interrogation_Position=1865; Antisense; ACAGAACCAGATGTCCGAGTCTATT
>probe:Drosophila_2:1633962_a_at:583:303; Interrogation_Position=1879; Antisense; CCGAGTCTATTTGGAGTACGCTGAA
>probe:Drosophila_2:1633962_a_at:338:65; Interrogation_Position=1905; Antisense; ATGGTCATTTCGCTGATGGGCCGCA
>probe:Drosophila_2:1633962_a_at:567:319; Interrogation_Position=1924; Antisense; GCCGCAGCGATCTCCAGAGTTATGT
>probe:Drosophila_2:1633962_a_at:454:41; Interrogation_Position=1960; Antisense; ATCTGGCGGCTCTTAATGAGGCCTT
>probe:Drosophila_2:1633962_a_at:172:343; Interrogation_Position=2005; Antisense; GCTTCTTTATCACTGCTTTGGGAAA
>probe:Drosophila_2:1633962_a_at:45:561; Interrogation_Position=2025; Antisense; GGAAAGTCCGTTGTTGTCGTGTCAT
>probe:Drosophila_2:1633962_a_at:721:145; Interrogation_Position=2084; Antisense; ACTCTGGCAGTGTAATCATTCCCTC
>probe:Drosophila_2:1633962_a_at:672:631; Interrogation_Position=2103; Antisense; TCCCTCTCGGTTCTTTTCTGTAAAT

Paste this into a BLAST search page for me
GGGCTTCATCCGTGTGCGTTACAACCGTGGGCGTATGTTGCATGAACCTTGGAAGCTGTGGAGCACTTACTCACATTACTCACAGCGCTTACCATGCAGGGCGATGGCGGCTACCTTTAGAGGACACAGAACCAGATGTCCGAGTCTATTCCGAGTCTATTTGGAGTACGCTGAAATGGTCATTTCGCTGATGGGCCGCAGCCGCAGCGATCTCCAGAGTTATGTATCTGGCGGCTCTTAATGAGGCCTTGCTTCTTTATCACTGCTTTGGGAAAGGAAAGTCCGTTGTTGTCGTGTCATACTCTGGCAGTGTAATCATTCCCTCTCCCTCTCGGTTCTTTTCTGTAAAT

Full Affymetrix probeset data:

Annotations for 1633962_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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