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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1633963_a_at:

>probe:Drosophila_2:1633963_a_at:614:701; Interrogation_Position=2625; Antisense; TTTTCCTACAATGGCTGCCCTGGAT
>probe:Drosophila_2:1633963_a_at:71:589; Interrogation_Position=2645; Antisense; TGGATCTTGCGAATGGGTCGACCCG
>probe:Drosophila_2:1633963_a_at:18:413; Interrogation_Position=2664; Antisense; GACCCGGTCGCAAGATTACACGCAA
>probe:Drosophila_2:1633963_a_at:236:581; Interrogation_Position=2754; Antisense; TGGCCAATGTCCTCGACATCGACGA
>probe:Drosophila_2:1633963_a_at:342:403; Interrogation_Position=2780; Antisense; GACTTCCGGCACACAATATCTGGCT
>probe:Drosophila_2:1633963_a_at:198:533; Interrogation_Position=2851; Antisense; GGTGGAGGAGCATCACACGGCCATC
>probe:Drosophila_2:1633963_a_at:193:363; Interrogation_Position=2912; Antisense; GAATTGCAATTTATTACGGCGCGGA
>probe:Drosophila_2:1633963_a_at:378:329; Interrogation_Position=2932; Antisense; GCGGATGCGCAAAGCTGACGACGAA
>probe:Drosophila_2:1633963_a_at:599:653; Interrogation_Position=3012; Antisense; TAATTGTTTTCACGCTCTTCACGAT
>probe:Drosophila_2:1633963_a_at:475:689; Interrogation_Position=3037; Antisense; TATTGCAACGGTTACGGTGCTGCTC
>probe:Drosophila_2:1633963_a_at:18:225; Interrogation_Position=3087; Antisense; AAGGACGCTCGAATTAGGCCATTAA
>probe:Drosophila_2:1633963_a_at:20:69; Interrogation_Position=3102; Antisense; AGGCCATTAAGCTACGGATACGTCG
>probe:Drosophila_2:1633963_a_at:28:543; Interrogation_Position=3117; Antisense; GGATACGTCGGAAGCATCGGCTGAC
>probe:Drosophila_2:1633963_a_at:535:41; Interrogation_Position=3132; Antisense; ATCGGCTGACGGGAGATGCCTAGTT

Paste this into a BLAST search page for me
TTTTCCTACAATGGCTGCCCTGGATTGGATCTTGCGAATGGGTCGACCCGGACCCGGTCGCAAGATTACACGCAATGGCCAATGTCCTCGACATCGACGAGACTTCCGGCACACAATATCTGGCTGGTGGAGGAGCATCACACGGCCATCGAATTGCAATTTATTACGGCGCGGAGCGGATGCGCAAAGCTGACGACGAATAATTGTTTTCACGCTCTTCACGATTATTGCAACGGTTACGGTGCTGCTCAAGGACGCTCGAATTAGGCCATTAAAGGCCATTAAGCTACGGATACGTCGGGATACGTCGGAAGCATCGGCTGACATCGGCTGACGGGAGATGCCTAGTT

Full Affymetrix probeset data:

Annotations for 1633963_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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