FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634015_s_at:

>probe:Drosophila_2:1634015_s_at:330:17; Interrogation_Position=2805; Antisense; ATTTGGTCCTACTCAAATGCCTTCG
>probe:Drosophila_2:1634015_s_at:506:19; Interrogation_Position=2841; Antisense; ATATATAAGCCCGACCGAGGCGCGT
>probe:Drosophila_2:1634015_s_at:505:291; Interrogation_Position=2863; Antisense; CGTGGCCAGAACATCCGTTGTGAGA
>probe:Drosophila_2:1634015_s_at:399:61; Interrogation_Position=2930; Antisense; ATGTAAGTCCCAGCAATCCAAGTCT
>probe:Drosophila_2:1634015_s_at:420:643; Interrogation_Position=2954; Antisense; TCTCCCGCAGACAAAGTCCATATGC
>probe:Drosophila_2:1634015_s_at:661:21; Interrogation_Position=2973; Antisense; ATATGCAAATCTCTTCCCTTTTAGC
>probe:Drosophila_2:1634015_s_at:577:705; Interrogation_Position=2993; Antisense; TTAGCCTTGGGCATTCCTTTCTCAA
>probe:Drosophila_2:1634015_s_at:528:429; Interrogation_Position=3085; Antisense; GAGTAGATGCACCAGATTTCGTAAA
>probe:Drosophila_2:1634015_s_at:600:341; Interrogation_Position=3147; Antisense; GCTTTTCCTTTCCTTCGATAGACAG
>probe:Drosophila_2:1634015_s_at:531:387; Interrogation_Position=3210; Antisense; GAACAATGCTCGAGAGGCTCTGCCC
>probe:Drosophila_2:1634015_s_at:145:155; Interrogation_Position=3254; Antisense; ACAGTGCAACATACCTTAGAGATTT
>probe:Drosophila_2:1634015_s_at:471:673; Interrogation_Position=3319; Antisense; TATACACGAATTGTTTTTCCTCTTC
>probe:Drosophila_2:1634015_s_at:436:645; Interrogation_Position=3339; Antisense; TCTTCCCAATACCTGCATACTTAGA
>probe:Drosophila_2:1634015_s_at:466:661; Interrogation_Position=3370; Antisense; TAAACTCTCCCCATTTCAAATCAAA

Paste this into a BLAST search page for me
ATTTGGTCCTACTCAAATGCCTTCGATATATAAGCCCGACCGAGGCGCGTCGTGGCCAGAACATCCGTTGTGAGAATGTAAGTCCCAGCAATCCAAGTCTTCTCCCGCAGACAAAGTCCATATGCATATGCAAATCTCTTCCCTTTTAGCTTAGCCTTGGGCATTCCTTTCTCAAGAGTAGATGCACCAGATTTCGTAAAGCTTTTCCTTTCCTTCGATAGACAGGAACAATGCTCGAGAGGCTCTGCCCACAGTGCAACATACCTTAGAGATTTTATACACGAATTGTTTTTCCTCTTCTCTTCCCAATACCTGCATACTTAGATAAACTCTCCCCATTTCAAATCAAA

Full Affymetrix probeset data:

Annotations for 1634015_s_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720