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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634037_s_at:

>probe:Drosophila_2:1634037_s_at:417:249; Interrogation_Position=2586; Antisense; CAATGGGCCCCGTACTTAATGGCGG
>probe:Drosophila_2:1634037_s_at:308:141; Interrogation_Position=2622; Antisense; ACGGATCCGGTTTGGATGGCATGAA
>probe:Drosophila_2:1634037_s_at:85:441; Interrogation_Position=2636; Antisense; GATGGCATGAAAAACTCGCCGGCCA
>probe:Drosophila_2:1634037_s_at:504:353; Interrogation_Position=2694; Antisense; GCAGCGGCATGGGTGACTACAATCT
>probe:Drosophila_2:1634037_s_at:586:611; Interrogation_Position=2707; Antisense; TGACTACAATCTGGGCGGATTCGGC
>probe:Drosophila_2:1634037_s_at:150:575; Interrogation_Position=2729; Antisense; GGCGGACCCGGCGAGAACGATCAAA
>probe:Drosophila_2:1634037_s_at:533:237; Interrogation_Position=2757; Antisense; AATCGGCGGCCATTCTGAAGATCAA
>probe:Drosophila_2:1634037_s_at:108:439; Interrogation_Position=2798; Antisense; GAGGCCAAGCGGTTCGAGAAAGACA
>probe:Drosophila_2:1634037_s_at:407:453; Interrogation_Position=2825; Antisense; GATCATCCGGACTACTTTATGCCAT
>probe:Drosophila_2:1634037_s_at:662:115; Interrogation_Position=2877; Antisense; AGCATCAGCAGCATCTCAACACGGT
>probe:Drosophila_2:1634037_s_at:126:39; Interrogation_Position=2889; Antisense; ATCTCAACACGGTGGCAGCCGCTGT
>probe:Drosophila_2:1634037_s_at:333:317; Interrogation_Position=3005; Antisense; GCCTCCAATCTGCTCAGTAATGGCA
>probe:Drosophila_2:1634037_s_at:557:581; Interrogation_Position=3025; Antisense; TGGCAACAACAATTTCTGAAGGCGA
>probe:Drosophila_2:1634037_s_at:467:615; Interrogation_Position=3041; Antisense; TGAAGGCGATGACCACACGCAACAC

Paste this into a BLAST search page for me
CAATGGGCCCCGTACTTAATGGCGGACGGATCCGGTTTGGATGGCATGAAGATGGCATGAAAAACTCGCCGGCCAGCAGCGGCATGGGTGACTACAATCTTGACTACAATCTGGGCGGATTCGGCGGCGGACCCGGCGAGAACGATCAAAAATCGGCGGCCATTCTGAAGATCAAGAGGCCAAGCGGTTCGAGAAAGACAGATCATCCGGACTACTTTATGCCATAGCATCAGCAGCATCTCAACACGGTATCTCAACACGGTGGCAGCCGCTGTGCCTCCAATCTGCTCAGTAATGGCATGGCAACAACAATTTCTGAAGGCGATGAAGGCGATGACCACACGCAACAC

Full Affymetrix probeset data:

Annotations for 1634037_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

measure downtime