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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634065_s_at:

>probe:Drosophila_2:1634065_s_at:195:291; Interrogation_Position=1636; Antisense; CGTTCCGGTGAGACCGAGGACTCGT
>probe:Drosophila_2:1634065_s_at:344:437; Interrogation_Position=1651; Antisense; GAGGACTCGTTCATCGGTGACCTGG
>probe:Drosophila_2:1634065_s_at:301:579; Interrogation_Position=1693; Antisense; GGCCAGATCAAGACCGGAGCTCCAT
>probe:Drosophila_2:1634065_s_at:80:91; Interrogation_Position=1739; Antisense; AGTACAACCAGATCCTGCGCATCGA
>probe:Drosophila_2:1634065_s_at:296:217; Interrogation_Position=1786; Antisense; AAGTTCGCCGGCAAGTCGTTCAGGA
>probe:Drosophila_2:1634065_s_at:151:89; Interrogation_Position=1799; Antisense; AGTCGTTCAGGAAGCCGCAGTAAGC
>probe:Drosophila_2:1634065_s_at:712:123; Interrogation_Position=1821; Antisense; AGCGCAGGGCACTTCGAAATTCCAA
>probe:Drosophila_2:1634065_s_at:186:263; Interrogation_Position=1852; Antisense; CAGCCCCATCGAATGAGATCTGGAT
>probe:Drosophila_2:1634065_s_at:330:535; Interrogation_Position=1920; Antisense; GGTGCACGTGTTCGTCAACCTTTTA
>probe:Drosophila_2:1634065_s_at:243:135; Interrogation_Position=1944; Antisense; ACGTTCGGAACTTGTGTCTGGCGCA
>probe:Drosophila_2:1634065_s_at:55:177; Interrogation_Position=1993; Antisense; AAACCCATTTGCTGTCTCTATGCTT
>probe:Drosophila_2:1634065_s_at:405:499; Interrogation_Position=2006; Antisense; GTCTCTATGCTTCGTTCTTAGACAT
>probe:Drosophila_2:1634065_s_at:54:691; Interrogation_Position=2102; Antisense; TATTCGTTCAGTTGCCGAGAGCTTT
>probe:Drosophila_2:1634065_s_at:175:37; Interrogation_Position=2131; Antisense; ATCTTCAATGTAATCGCTGTAATCG

Paste this into a BLAST search page for me
CGTTCCGGTGAGACCGAGGACTCGTGAGGACTCGTTCATCGGTGACCTGGGGCCAGATCAAGACCGGAGCTCCATAGTACAACCAGATCCTGCGCATCGAAAGTTCGCCGGCAAGTCGTTCAGGAAGTCGTTCAGGAAGCCGCAGTAAGCAGCGCAGGGCACTTCGAAATTCCAACAGCCCCATCGAATGAGATCTGGATGGTGCACGTGTTCGTCAACCTTTTAACGTTCGGAACTTGTGTCTGGCGCAAAACCCATTTGCTGTCTCTATGCTTGTCTCTATGCTTCGTTCTTAGACATTATTCGTTCAGTTGCCGAGAGCTTTATCTTCAATGTAATCGCTGTAATCG

Full Affymetrix probeset data:

Annotations for 1634065_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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