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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634072_s_at:

>probe:Drosophila_2:1634072_s_at:265:671; Interrogation_Position=2002; Antisense; TACGTGCAGCCGTTGCTGAATTCAC
>probe:Drosophila_2:1634072_s_at:299:423; Interrogation_Position=2074; Antisense; GAGAAGAACAACCATGCGGCGCCCT
>probe:Drosophila_2:1634072_s_at:406:197; Interrogation_Position=2106; Antisense; AACGGGCAGCATCTCCGCACTGTTT
>probe:Drosophila_2:1634072_s_at:271:567; Interrogation_Position=2134; Antisense; GGCACCTACTACCTGAAGGACGTGG
>probe:Drosophila_2:1634072_s_at:441:589; Interrogation_Position=2156; Antisense; TGGATGCGCTGCATAGACGCACCTA
>probe:Drosophila_2:1634072_s_at:235:717; Interrogation_Position=2246; Antisense; TTCGGTTTCGCCTACAACTTGACAA
>probe:Drosophila_2:1634072_s_at:165:633; Interrogation_Position=2285; Antisense; TCGACCAAACCCATGTAAGCAGTAG
>probe:Drosophila_2:1634072_s_at:659:699; Interrogation_Position=2326; Antisense; TTTATAACTGGTATGATCCCGAGGG
>probe:Drosophila_2:1634072_s_at:83:683; Interrogation_Position=2356; Antisense; TATCCTTTTTGCTCTTATTCGGGTC
>probe:Drosophila_2:1634072_s_at:673:637; Interrogation_Position=2374; Antisense; TCGGGTCCTTGTCGCGTATATAGTA
>probe:Drosophila_2:1634072_s_at:453:253; Interrogation_Position=2417; Antisense; CAAGCTTGCGAATTAACTCTTTCAT
>probe:Drosophila_2:1634072_s_at:598:193; Interrogation_Position=2431; Antisense; AACTCTTTCATCCAGTCAGACCTTA
>probe:Drosophila_2:1634072_s_at:205:217; Interrogation_Position=2471; Antisense; AAGTCTTAACTAGCGTCGGTACTGC
>probe:Drosophila_2:1634072_s_at:85:501; Interrogation_Position=2485; Antisense; GTCGGTACTGCAATCTATGCCTATA

Paste this into a BLAST search page for me
TACGTGCAGCCGTTGCTGAATTCACGAGAAGAACAACCATGCGGCGCCCTAACGGGCAGCATCTCCGCACTGTTTGGCACCTACTACCTGAAGGACGTGGTGGATGCGCTGCATAGACGCACCTATTCGGTTTCGCCTACAACTTGACAATCGACCAAACCCATGTAAGCAGTAGTTTATAACTGGTATGATCCCGAGGGTATCCTTTTTGCTCTTATTCGGGTCTCGGGTCCTTGTCGCGTATATAGTACAAGCTTGCGAATTAACTCTTTCATAACTCTTTCATCCAGTCAGACCTTAAAGTCTTAACTAGCGTCGGTACTGCGTCGGTACTGCAATCTATGCCTATA

Full Affymetrix probeset data:

Annotations for 1634072_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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