FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634086_a_at:

>probe:Drosophila_2:1634086_a_at:546:571; Interrogation_Position=8085; Antisense; GGCTACATGCTAGAGCGATCGCAGT
>probe:Drosophila_2:1634086_a_at:365:43; Interrogation_Position=8102; Antisense; ATCGCAGTCTGCTAAAAACACGTGG
>probe:Drosophila_2:1634086_a_at:161:181; Interrogation_Position=8117; Antisense; AAACACGTGGTCCATGGCCTTCGAG
>probe:Drosophila_2:1634086_a_at:42:119; Interrogation_Position=8140; Antisense; AGCTCTGTCCAGATGAGGTCAGCGA
>probe:Drosophila_2:1634086_a_at:448:165; Interrogation_Position=8217; Antisense; AAATCGGAACCGGTGGCTCAGCCAG
>probe:Drosophila_2:1634086_a_at:328:343; Interrogation_Position=8249; Antisense; GCTTGAGGGATCTACCGGCGGCACA
>probe:Drosophila_2:1634086_a_at:369:331; Interrogation_Position=8266; Antisense; GCGGCACAGAGCAGTTGCCCGAAAA
>probe:Drosophila_2:1634086_a_at:265:457; Interrogation_Position=8343; Antisense; GATAGCAACGCTATTCCACGACTTT
>probe:Drosophila_2:1634086_a_at:24:99; Interrogation_Position=8360; Antisense; ACGACTTTCGCGTCAGCTATTTGGG
>probe:Drosophila_2:1634086_a_at:12:543; Interrogation_Position=8384; Antisense; GGCTTACACTTCGACTGGCAGTGGC
>probe:Drosophila_2:1634086_a_at:588:147; Interrogation_Position=8412; Antisense; ACTAGTGGAGGTTCCGCGCCAACTT
>probe:Drosophila_2:1634086_a_at:574:389; Interrogation_Position=8496; Antisense; GAAACAACCGGCGAGACGACCATTA
>probe:Drosophila_2:1634086_a_at:283:425; Interrogation_Position=8508; Antisense; GAGACGACCATTAACGGACTGACAA
>probe:Drosophila_2:1634086_a_at:345:557; Interrogation_Position=8523; Antisense; GGACTGACAAACAGCCTGGACCAAA

Paste this into a BLAST search page for me
GGCTACATGCTAGAGCGATCGCAGTATCGCAGTCTGCTAAAAACACGTGGAAACACGTGGTCCATGGCCTTCGAGAGCTCTGTCCAGATGAGGTCAGCGAAAATCGGAACCGGTGGCTCAGCCAGGCTTGAGGGATCTACCGGCGGCACAGCGGCACAGAGCAGTTGCCCGAAAAGATAGCAACGCTATTCCACGACTTTACGACTTTCGCGTCAGCTATTTGGGGGCTTACACTTCGACTGGCAGTGGCACTAGTGGAGGTTCCGCGCCAACTTGAAACAACCGGCGAGACGACCATTAGAGACGACCATTAACGGACTGACAAGGACTGACAAACAGCCTGGACCAAA

Full Affymetrix probeset data:

Annotations for 1634086_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720