FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634104_a_at:

>probe:Drosophila_2:1634104_a_at:682:253; Interrogation_Position=2992; Antisense; CAAACAGCTGGAGCGCCTAAGGGAT
>probe:Drosophila_2:1634104_a_at:537:409; Interrogation_Position=3053; Antisense; GACGAGAATAAGACCATTGCCCTGG
>probe:Drosophila_2:1634104_a_at:13:723; Interrogation_Position=3069; Antisense; TTGCCCTGGGCACATCTAAGCTAAA
>probe:Drosophila_2:1634104_a_at:157:193; Interrogation_Position=3092; Antisense; AACTATCTTGATCCACGCATATCGG
>probe:Drosophila_2:1634104_a_at:50:135; Interrogation_Position=3106; Antisense; ACGCATATCGGTGGCTTGGTGTAAA
>probe:Drosophila_2:1634104_a_at:65:203; Interrogation_Position=3175; Antisense; AACCAAATTTCTGTGGGCCGTTCAT
>probe:Drosophila_2:1634104_a_at:703:477; Interrogation_Position=3219; Antisense; GTTTCTAAATGGGTTCTCCTCACAG
>probe:Drosophila_2:1634104_a_at:157:157; Interrogation_Position=3323; Antisense; ACACTCGCACCCGATCGAAGAAGAT
>probe:Drosophila_2:1634104_a_at:28:665; Interrogation_Position=3384; Antisense; TAAATAGATTCCATGCCAATCCCGC
>probe:Drosophila_2:1634104_a_at:306:301; Interrogation_Position=3405; Antisense; CCGCCATTGTTTGGTCCACAGTTTA
>probe:Drosophila_2:1634104_a_at:272:25; Interrogation_Position=3438; Antisense; ATAGTGCATATGTCCAGCTTTCGGC
>probe:Drosophila_2:1634104_a_at:543:119; Interrogation_Position=3493; Antisense; AGCGGGACGGAATGCTGCACTACAT
>probe:Drosophila_2:1634104_a_at:350:39; Interrogation_Position=3516; Antisense; ATCGTAGTCGTGGAACCGCTTGTAC
>probe:Drosophila_2:1634104_a_at:635:131; Interrogation_Position=3539; Antisense; ACGCGTCCGTTTTGTCTGCTTTGAA

Paste this into a BLAST search page for me
CAAACAGCTGGAGCGCCTAAGGGATGACGAGAATAAGACCATTGCCCTGGTTGCCCTGGGCACATCTAAGCTAAAAACTATCTTGATCCACGCATATCGGACGCATATCGGTGGCTTGGTGTAAAAACCAAATTTCTGTGGGCCGTTCATGTTTCTAAATGGGTTCTCCTCACAGACACTCGCACCCGATCGAAGAAGATTAAATAGATTCCATGCCAATCCCGCCCGCCATTGTTTGGTCCACAGTTTAATAGTGCATATGTCCAGCTTTCGGCAGCGGGACGGAATGCTGCACTACATATCGTAGTCGTGGAACCGCTTGTACACGCGTCCGTTTTGTCTGCTTTGAA

Full Affymetrix probeset data:

Annotations for 1634104_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720