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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634200_a_at:

>probe:Drosophila_2:1634200_a_at:727:699; Interrogation_Position=2770; Antisense; TTTTGCGACTTGTGTCTGCTTTGAC
>probe:Drosophila_2:1634200_a_at:491:515; Interrogation_Position=2781; Antisense; GTGTCTGCTTTGACAAATCGTTGCA
>probe:Drosophila_2:1634200_a_at:25:233; Interrogation_Position=2796; Antisense; AATCGTTGCAACCAAAACTAGAACT
>probe:Drosophila_2:1634200_a_at:29:421; Interrogation_Position=2828; Antisense; GAGAGACGGTTATACTTTATTATTA
>probe:Drosophila_2:1634200_a_at:324:149; Interrogation_Position=2890; Antisense; ACATTAGTTTTCTGTTATTCGTGAA
>probe:Drosophila_2:1634200_a_at:477:687; Interrogation_Position=2905; Antisense; TATTCGTGAAGGACTCGTCGCACAC
>probe:Drosophila_2:1634200_a_at:497:183; Interrogation_Position=2938; Antisense; AAAAGACAGCAGGTGCGCAGGTGCC
>probe:Drosophila_2:1634200_a_at:271:627; Interrogation_Position=2959; Antisense; TGCCGTCTCGCTCGCAAACAAAATA
>probe:Drosophila_2:1634200_a_at:524:229; Interrogation_Position=3004; Antisense; AATGACATATTTCCCGTTTTTGAAT
>probe:Drosophila_2:1634200_a_at:121:615; Interrogation_Position=3024; Antisense; TGAATTTCTTGCTATGCTTCTCAAT
>probe:Drosophila_2:1634200_a_at:582:51; Interrogation_Position=3037; Antisense; ATGCTTCTCAATTGTCTGAACCGAT
>probe:Drosophila_2:1634200_a_at:497:499; Interrogation_Position=3050; Antisense; GTCTGAACCGATATACAAAACATTT
>probe:Drosophila_2:1634200_a_at:42:1; Interrogation_Position=3093; Antisense; AGGCGTACTACAGAACTTACCCACA
>probe:Drosophila_2:1634200_a_at:80:39; Interrogation_Position=3232; Antisense; ATCTATACATGTACCTACCACCTAA

Paste this into a BLAST search page for me
TTTTGCGACTTGTGTCTGCTTTGACGTGTCTGCTTTGACAAATCGTTGCAAATCGTTGCAACCAAAACTAGAACTGAGAGACGGTTATACTTTATTATTAACATTAGTTTTCTGTTATTCGTGAATATTCGTGAAGGACTCGTCGCACACAAAAGACAGCAGGTGCGCAGGTGCCTGCCGTCTCGCTCGCAAACAAAATAAATGACATATTTCCCGTTTTTGAATTGAATTTCTTGCTATGCTTCTCAATATGCTTCTCAATTGTCTGAACCGATGTCTGAACCGATATACAAAACATTTAGGCGTACTACAGAACTTACCCACAATCTATACATGTACCTACCACCTAA

Full Affymetrix probeset data:

Annotations for 1634200_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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