FlyAtlas: the Drosophila gene expression atlas

Biotechnology & Biological Sciences Research Council

Home & Search

Batch/table Search

Tissues Search

BLASTP Search

About & FAQ

Top 50

Original data

Interesting meta-analysis

Links

Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634208_a_at:

>probe:Drosophila_2:1634208_a_at:713:691; Interrogation_Position=4912; Antisense; TTTGGCTACCGCATCAAAATCGAAG
>probe:Drosophila_2:1634208_a_at:402:227; Interrogation_Position=4929; Antisense; AATCGAAGCTTATAACCTTAGGCAA
>probe:Drosophila_2:1634208_a_at:73:571; Interrogation_Position=4962; Antisense; GGCATTACTGAGTCTGTAGTTTGTT
>probe:Drosophila_2:1634208_a_at:365:149; Interrogation_Position=5039; Antisense; ACTTGTTGATTTTCGTGTTTCTTGA
>probe:Drosophila_2:1634208_a_at:60:515; Interrogation_Position=5053; Antisense; GTGTTTCTTGAGTTCTAGACCATTA
>probe:Drosophila_2:1634208_a_at:544:489; Interrogation_Position=5111; Antisense; GTACATTTCACGCAGGGTTTCACTT
>probe:Drosophila_2:1634208_a_at:237:349; Interrogation_Position=5122; Antisense; GCAGGGTTTCACTTTGCAATGTAAA
>probe:Drosophila_2:1634208_a_at:333:453; Interrogation_Position=5178; Antisense; GATACTTGCTTGTACATTGTTCTTG
>probe:Drosophila_2:1634208_a_at:544:471; Interrogation_Position=5196; Antisense; GTTCTTGACTAGGATACAACTTTCT
>probe:Drosophila_2:1634208_a_at:438:395; Interrogation_Position=5221; Antisense; GAAATCTCTTTTGTTATGCTTATGA
>probe:Drosophila_2:1634208_a_at:7:489; Interrogation_Position=5354; Antisense; GTACTTAAATATTGCTTAGCGGGAC
>probe:Drosophila_2:1634208_a_at:355:705; Interrogation_Position=5369; Antisense; TTAGCGGGACGGTTTTTATCAGGCG
>probe:Drosophila_2:1634208_a_at:308:71; Interrogation_Position=5389; Antisense; AGGCGTCCTGAGTTTGTGTAGCTGA
>probe:Drosophila_2:1634208_a_at:145:515; Interrogation_Position=5404; Antisense; GTGTAGCTGATTTCTGTTAGCATAT

Paste this into a BLAST search page for me
TTTGGCTACCGCATCAAAATCGAAGAATCGAAGCTTATAACCTTAGGCAAGGCATTACTGAGTCTGTAGTTTGTTACTTGTTGATTTTCGTGTTTCTTGAGTGTTTCTTGAGTTCTAGACCATTAGTACATTTCACGCAGGGTTTCACTTGCAGGGTTTCACTTTGCAATGTAAAGATACTTGCTTGTACATTGTTCTTGGTTCTTGACTAGGATACAACTTTCTGAAATCTCTTTTGTTATGCTTATGAGTACTTAAATATTGCTTAGCGGGACTTAGCGGGACGGTTTTTATCAGGCGAGGCGTCCTGAGTTTGTGTAGCTGAGTGTAGCTGATTTCTGTTAGCATAT

Full Affymetrix probeset data:

Annotations for 1634208_a_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720