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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634287_at:

>probe:Drosophila_2:1634287_at:121:347; Interrogation_Position=100; Antisense; GCATCAGCTAAAAGCGACCGGCGAA
>probe:Drosophila_2:1634287_at:21:89; Interrogation_Position=13; Antisense; AGTCGCGCGTCGTCGCTTCGAGCGT
>probe:Drosophila_2:1634287_at:622:501; Interrogation_Position=24; Antisense; GTCGCTTCGAGCGTGAGGTTGAAAA
>probe:Drosophila_2:1634287_at:434:339; Interrogation_Position=27; Antisense; GCTTCGAGCGTGAGGTTGAAAACCC
>probe:Drosophila_2:1634287_at:499:329; Interrogation_Position=34; Antisense; GCGTGAGGTTGAAAACCCAGTCATC
>probe:Drosophila_2:1634287_at:470:539; Interrogation_Position=40; Antisense; GGTTGAAAACCCAGTCATCAGAGGA
>probe:Drosophila_2:1634287_at:633:387; Interrogation_Position=44; Antisense; GAAAACCCAGTCATCAGAGGAAAAT
>probe:Drosophila_2:1634287_at:53:267; Interrogation_Position=51; Antisense; CAGTCATCAGAGGAAAATAAACGTT
>probe:Drosophila_2:1634287_at:201:1; Interrogation_Position=67; Antisense; ATAAACGTTAACACCGATTTGTGCG
>probe:Drosophila_2:1634287_at:67:475; Interrogation_Position=73; Antisense; GTTAACACCGATTTGTGCGGCCAAC
>probe:Drosophila_2:1634287_at:717:187; Interrogation_Position=76; Antisense; AACACCGATTTGTGCGGCCAACAAG
>probe:Drosophila_2:1634287_at:624:459; Interrogation_Position=82; Antisense; GATTTGTGCGGCCAACAAGCATCAG
>probe:Drosophila_2:1634287_at:148:727; Interrogation_Position=85; Antisense; TTGTGCGGCCAACAAGCATCAGCTA
>probe:Drosophila_2:1634287_at:165:509; Interrogation_Position=87; Antisense; GTGCGGCCAACAAGCATCAGCTAAA

Paste this into a BLAST search page for me
GCATCAGCTAAAAGCGACCGGCGAAAGTCGCGCGTCGTCGCTTCGAGCGTGTCGCTTCGAGCGTGAGGTTGAAAAGCTTCGAGCGTGAGGTTGAAAACCCGCGTGAGGTTGAAAACCCAGTCATCGGTTGAAAACCCAGTCATCAGAGGAGAAAACCCAGTCATCAGAGGAAAATCAGTCATCAGAGGAAAATAAACGTTATAAACGTTAACACCGATTTGTGCGGTTAACACCGATTTGTGCGGCCAACAACACCGATTTGTGCGGCCAACAAGGATTTGTGCGGCCAACAAGCATCAGTTGTGCGGCCAACAAGCATCAGCTAGTGCGGCCAACAAGCATCAGCTAAA

Full Affymetrix probeset data:

Annotations for 1634287_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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