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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634294_s_at:

>probe:Drosophila_2:1634294_s_at:315:441; Interrogation_Position=2849; Antisense; GATGGGTTACTCGTGCAACTGGTTT
>probe:Drosophila_2:1634294_s_at:17:353; Interrogation_Position=2883; Antisense; GCAGCGACTGCATGCGCATCTATAT
>probe:Drosophila_2:1634294_s_at:704:27; Interrogation_Position=2931; Antisense; ATACCCTGGATCAGTACTTGCTGCA
>probe:Drosophila_2:1634294_s_at:552:71; Interrogation_Position=2955; Antisense; AGGCGGCTGTGCAAAGGAGTTTCCA
>probe:Drosophila_2:1634294_s_at:148:169; Interrogation_Position=2967; Antisense; AAAGGAGTTTCCAGCTGCAGATGCT
>probe:Drosophila_2:1634294_s_at:291:99; Interrogation_Position=2985; Antisense; AGATGCTGACGCCATCTGGTTCCGT
>probe:Drosophila_2:1634294_s_at:614:291; Interrogation_Position=3046; Antisense; CGTGGTGGCCACGTCGAATGCGACA
>probe:Drosophila_2:1634294_s_at:157:367; Interrogation_Position=3061; Antisense; GAATGCGACACTGCGGATGCGTTTG
>probe:Drosophila_2:1634294_s_at:410:29; Interrogation_Position=3089; Antisense; ATACAGTACGTGCTCGATGGCCAGC
>probe:Drosophila_2:1634294_s_at:601:79; Interrogation_Position=3132; Antisense; AGGTCAGTGGATTCCCCGAGCAGCA
>probe:Drosophila_2:1634294_s_at:249:159; Interrogation_Position=3288; Antisense; ACACACACTGTGGTTGTCACACATT
>probe:Drosophila_2:1634294_s_at:264:613; Interrogation_Position=3354; Antisense; TGAAACACAGAGACACCCACGCAAT
>probe:Drosophila_2:1634294_s_at:82:103; Interrogation_Position=3391; Antisense; AGAGCATTTTCCAAATCGGCGCACA
>probe:Drosophila_2:1634294_s_at:348:357; Interrogation_Position=3411; Antisense; GCACAGCGTTGTTCAGACTCAGACT

Paste this into a BLAST search page for me
GATGGGTTACTCGTGCAACTGGTTTGCAGCGACTGCATGCGCATCTATATATACCCTGGATCAGTACTTGCTGCAAGGCGGCTGTGCAAAGGAGTTTCCAAAAGGAGTTTCCAGCTGCAGATGCTAGATGCTGACGCCATCTGGTTCCGTCGTGGTGGCCACGTCGAATGCGACAGAATGCGACACTGCGGATGCGTTTGATACAGTACGTGCTCGATGGCCAGCAGGTCAGTGGATTCCCCGAGCAGCAACACACACTGTGGTTGTCACACATTTGAAACACAGAGACACCCACGCAATAGAGCATTTTCCAAATCGGCGCACAGCACAGCGTTGTTCAGACTCAGACT

Full Affymetrix probeset data:

Annotations for 1634294_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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