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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634325_a_at:

>probe:Drosophila_2:1634325_a_at:617:243; Interrogation_Position=3895; Antisense; AATTTACACTTTGTGCCTGAGCGTA
>probe:Drosophila_2:1634325_a_at:634:505; Interrogation_Position=3907; Antisense; GTGCCTGAGCGTAACGTAACGAACA
>probe:Drosophila_2:1634325_a_at:11:23; Interrogation_Position=3941; Antisense; ATATATCAAGCCAGATCGGTTCAGA
>probe:Drosophila_2:1634325_a_at:46:97; Interrogation_Position=3953; Antisense; AGATCGGTTCAGATCAGCAACAGCA
>probe:Drosophila_2:1634325_a_at:478:155; Interrogation_Position=3972; Antisense; ACAGCAGTTTAGTTTTCTATGCCCA
>probe:Drosophila_2:1634325_a_at:410:477; Interrogation_Position=3983; Antisense; GTTTTCTATGCCCAATTGATTACAT
>probe:Drosophila_2:1634325_a_at:418:151; Interrogation_Position=4031; Antisense; ACATATTTTATGACGAGCTTGCTTA
>probe:Drosophila_2:1634325_a_at:633:409; Interrogation_Position=4042; Antisense; GACGAGCTTGCTTAGTTGTTGTAAA
>probe:Drosophila_2:1634325_a_at:231:193; Interrogation_Position=4131; Antisense; AACTAACGAGCATTTTCGCTTAATG
>probe:Drosophila_2:1634325_a_at:300:369; Interrogation_Position=4170; Antisense; GAATCCAACTGTTAACTTAATCCCA
>probe:Drosophila_2:1634325_a_at:636:321; Interrogation_Position=4296; Antisense; GCGAGTAACTTCAAACCAACATTCT
>probe:Drosophila_2:1634325_a_at:320:175; Interrogation_Position=4308; Antisense; AAACCAACATTCTGTTCACAATGAA
>probe:Drosophila_2:1634325_a_at:621:239; Interrogation_Position=4338; Antisense; AATAAATTCTAGACACAGGACACTG
>probe:Drosophila_2:1634325_a_at:644:397; Interrogation_Position=4435; Antisense; GACAACTTTTTGCAATAACTTCGAA

Paste this into a BLAST search page for me
AATTTACACTTTGTGCCTGAGCGTAGTGCCTGAGCGTAACGTAACGAACAATATATCAAGCCAGATCGGTTCAGAAGATCGGTTCAGATCAGCAACAGCAACAGCAGTTTAGTTTTCTATGCCCAGTTTTCTATGCCCAATTGATTACATACATATTTTATGACGAGCTTGCTTAGACGAGCTTGCTTAGTTGTTGTAAAAACTAACGAGCATTTTCGCTTAATGGAATCCAACTGTTAACTTAATCCCAGCGAGTAACTTCAAACCAACATTCTAAACCAACATTCTGTTCACAATGAAAATAAATTCTAGACACAGGACACTGGACAACTTTTTGCAATAACTTCGAA

Full Affymetrix probeset data:

Annotations for 1634325_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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