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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634364_s_at:

>probe:Drosophila_2:1634364_s_at:361:331; Interrogation_Position=2712; Antisense; GCTGGCGACGAATCTTTGCTAGTAT
>probe:Drosophila_2:1634364_s_at:88:377; Interrogation_Position=2743; Antisense; GAAGCACAACCGTACTATCTAAACA
>probe:Drosophila_2:1634364_s_at:598:681; Interrogation_Position=2768; Antisense; TATGCAAATCTCACGTGTCAACCAC
>probe:Drosophila_2:1634364_s_at:710:157; Interrogation_Position=2840; Antisense; ACACACCACACAGCGTAGATTATAG
>probe:Drosophila_2:1634364_s_at:377:61; Interrogation_Position=2892; Antisense; ATGTGCCTGCATAGAATTCGGAAGT
>probe:Drosophila_2:1634364_s_at:199:263; Interrogation_Position=2920; Antisense; CAGAGCGAAAACGATTTGGCAACAA
>probe:Drosophila_2:1634364_s_at:473:253; Interrogation_Position=2939; Antisense; CAACAAGGGTTGCTTCACTTAAAAG
>probe:Drosophila_2:1634364_s_at:436:325; Interrogation_Position=2980; Antisense; GCGATAGATGATCACCATGAGGATA
>probe:Drosophila_2:1634364_s_at:119:459; Interrogation_Position=3001; Antisense; GATATTTTTGAACCTGAGTCCAGTT
>probe:Drosophila_2:1634364_s_at:357:285; Interrogation_Position=3014; Antisense; CTGAGTCCAGTTTTTATACGTAAAT
>probe:Drosophila_2:1634364_s_at:199:163; Interrogation_Position=3035; Antisense; AAATTGTACCGATGAGCAGCAACAG
>probe:Drosophila_2:1634364_s_at:478:111; Interrogation_Position=3064; Antisense; AGCAAGCCGCCGTATGATCTCATAC
>probe:Drosophila_2:1634364_s_at:281:165; Interrogation_Position=3089; Antisense; AAATCTACAGCAGACGCGCTTGCTT
>probe:Drosophila_2:1634364_s_at:201:147; Interrogation_Position=3155; Antisense; ACTCACGGCTTTGCTGCAGGTGAAT

Paste this into a BLAST search page for me
GCTGGCGACGAATCTTTGCTAGTATGAAGCACAACCGTACTATCTAAACATATGCAAATCTCACGTGTCAACCACACACACCACACAGCGTAGATTATAGATGTGCCTGCATAGAATTCGGAAGTCAGAGCGAAAACGATTTGGCAACAACAACAAGGGTTGCTTCACTTAAAAGGCGATAGATGATCACCATGAGGATAGATATTTTTGAACCTGAGTCCAGTTCTGAGTCCAGTTTTTATACGTAAATAAATTGTACCGATGAGCAGCAACAGAGCAAGCCGCCGTATGATCTCATACAAATCTACAGCAGACGCGCTTGCTTACTCACGGCTTTGCTGCAGGTGAAT

Full Affymetrix probeset data:

Annotations for 1634364_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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