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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634452_s_at:

>probe:Drosophila_2:1634452_s_at:4:699; Interrogation_Position=2984; Antisense; TTTACCAACCGCAACTCTAGATCAA
>probe:Drosophila_2:1634452_s_at:573:207; Interrogation_Position=3034; Antisense; AATAAACATTCGACGGCAAACCGAT
>probe:Drosophila_2:1634452_s_at:675:241; Interrogation_Position=3071; Antisense; AATAGTCTCATGTTGGCATACAGCT
>probe:Drosophila_2:1634452_s_at:58:669; Interrogation_Position=3132; Antisense; TACTCGTACGTTTAGGAATGATATA
>probe:Drosophila_2:1634452_s_at:580:3; Interrogation_Position=3198; Antisense; ATTGAAAGCCATGCAACTTGTGTTG
>probe:Drosophila_2:1634452_s_at:207:389; Interrogation_Position=3285; Antisense; GAAACATTTGCCTCGTGGACGGACA
>probe:Drosophila_2:1634452_s_at:558:637; Interrogation_Position=3297; Antisense; TCGTGGACGGACAGACTGCCAGTGC
>probe:Drosophila_2:1634452_s_at:1:407; Interrogation_Position=3310; Antisense; GACTGCCAGTGCGAACATTTCCAGA
>probe:Drosophila_2:1634452_s_at:423:189; Interrogation_Position=3323; Antisense; AACATTTCCAGAGGATACCCCATCT
>probe:Drosophila_2:1634452_s_at:608:551; Interrogation_Position=3370; Antisense; GGAGACTATCTTTCCACGCGATACA
>probe:Drosophila_2:1634452_s_at:607:575; Interrogation_Position=3416; Antisense; GGCCCGAACTTCAAACAATAATTAT
>probe:Drosophila_2:1634452_s_at:291:697; Interrogation_Position=3446; Antisense; TTTTGCATTTTTGTGTGGGCGGTAA
>probe:Drosophila_2:1634452_s_at:472:189; Interrogation_Position=3512; Antisense; AACTATGCTAAAACTGAAGACCCTA
>probe:Drosophila_2:1634452_s_at:152:375; Interrogation_Position=3527; Antisense; GAAGACCCTAATTTATGCAAACCAA

Paste this into a BLAST search page for me
TTTACCAACCGCAACTCTAGATCAAAATAAACATTCGACGGCAAACCGATAATAGTCTCATGTTGGCATACAGCTTACTCGTACGTTTAGGAATGATATAATTGAAAGCCATGCAACTTGTGTTGGAAACATTTGCCTCGTGGACGGACATCGTGGACGGACAGACTGCCAGTGCGACTGCCAGTGCGAACATTTCCAGAAACATTTCCAGAGGATACCCCATCTGGAGACTATCTTTCCACGCGATACAGGCCCGAACTTCAAACAATAATTATTTTTGCATTTTTGTGTGGGCGGTAAAACTATGCTAAAACTGAAGACCCTAGAAGACCCTAATTTATGCAAACCAA

Full Affymetrix probeset data:

Annotations for 1634452_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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