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FlyAtlas: the Drosophila gene expression atlas

University of Glasgow
Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634509_s_at:

>probe:Drosophila_2:1634509_s_at:106:13; Interrogation_Position=5033; Antisense; ATTCTCTTCCATTCGGATGGGCACA
>probe:Drosophila_2:1634509_s_at:664:593; Interrogation_Position=5050; Antisense; TGGGCACATTATACACATTGACTTT
>probe:Drosophila_2:1634509_s_at:712:633; Interrogation_Position=5105; Antisense; TTGGGATTCGAACAGTCGCCCTTTA
>probe:Drosophila_2:1634509_s_at:64:1; Interrogation_Position=5120; Antisense; TCGCCCTTTAAGCTAACGCCGGAAT
>probe:Drosophila_2:1634509_s_at:628:295; Interrogation_Position=5166; Antisense; CGAGCTCGGAGCATTGGCGTGAATT
>probe:Drosophila_2:1634509_s_at:111:729; Interrogation_Position=5208; Antisense; TTGGAATGATGTCTGCTCGAAAGCA
>probe:Drosophila_2:1634509_s_at:597:191; Interrogation_Position=5249; Antisense; AACTTCGTGGAAATTATGCGCAGCA
>probe:Drosophila_2:1634509_s_at:70:625; Interrogation_Position=5275; Antisense; TGCGCATTTGCCGTGCTTTAAGAAT
>probe:Drosophila_2:1634509_s_at:111:371; Interrogation_Position=5296; Antisense; GAATGGGTGCTCTGGAACCGTACAG
>probe:Drosophila_2:1634509_s_at:269:113; Interrogation_Position=5379; Antisense; AGCAGCTTGTACAGGACTCGTTAAA
>probe:Drosophila_2:1634509_s_at:548:169; Interrogation_Position=5403; Antisense; AAAGTCTGTCAACCAAACTGTACGA
>probe:Drosophila_2:1634509_s_at:590:485; Interrogation_Position=5422; Antisense; GTACGACGGTTATCAATACTACACT
>probe:Drosophila_2:1634509_s_at:505:393; Interrogation_Position=5509; Antisense; GAAATTGCCAAGCTGGTAACCAACA
>probe:Drosophila_2:1634509_s_at:539:655; Interrogation_Position=5534; Antisense; TAATGGACTGACTCTTTTGTAAAGG

Paste this into a BLAST search page for me
ATTCTCTTCCATTCGGATGGGCACATGGGCACATTATACACATTGACTTTTTGGGATTCGAACAGTCGCCCTTTATCGCCCTTTAAGCTAACGCCGGAATCGAGCTCGGAGCATTGGCGTGAATTTTGGAATGATGTCTGCTCGAAAGCAAACTTCGTGGAAATTATGCGCAGCATGCGCATTTGCCGTGCTTTAAGAATGAATGGGTGCTCTGGAACCGTACAGAGCAGCTTGTACAGGACTCGTTAAAAAAGTCTGTCAACCAAACTGTACGAGTACGACGGTTATCAATACTACACTGAAATTGCCAAGCTGGTAACCAACATAATGGACTGACTCTTTTGTAAAGG

Full Affymetrix probeset data:

Annotations for 1634509_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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