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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.

This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634540_at:

>probe:Drosophila_2:1634540_at:80:41; Interrogation_Position=1052; Antisense; ATCTGGATGCTGTTCTGCACGAAAC
>probe:Drosophila_2:1634540_at:587:609; Interrogation_Position=1067; Antisense; TGCACGAAACTATGCGTCTTTACCC
>probe:Drosophila_2:1634540_at:63:699; Interrogation_Position=1085; Antisense; TTTACCCACCACAAGTGATTGTCGG
>probe:Drosophila_2:1634540_at:566:189; Interrogation_Position=1145; Antisense; AACTTCCCTGCGGTTCAGAGATCTA
>probe:Drosophila_2:1634540_at:632:655; Interrogation_Position=1173; Antisense; TAATCTCTATGAACTGCAGCGCAAT
>probe:Drosophila_2:1634540_at:602:255; Interrogation_Position=1217; Antisense; CAAACCACTTTGATGCGCAGCGATT
>probe:Drosophila_2:1634540_at:496:51; Interrogation_Position=1229; Antisense; ATGCGCAGCGATTTTTGGACTCTCC
>probe:Drosophila_2:1634540_at:106:563; Interrogation_Position=1257; Antisense; GGAACTCCTGAGCTACAGTCTAGGT
>probe:Drosophila_2:1634540_at:559:87; Interrogation_Position=1273; Antisense; AGTCTAGGTCCTCGATGTTGTCCAG
>probe:Drosophila_2:1634540_at:265:179; Interrogation_Position=1325; Antisense; AAACATTGTTGGCTCCTATTTTGGC
>probe:Drosophila_2:1634540_at:139:607; Interrogation_Position=1377; Antisense; TGAGGTGCGCTTGGATTTGCGACTT
>probe:Drosophila_2:1634540_at:650:719; Interrogation_Position=1393; Antisense; TTGCGACTTGTTTTGGGATCATCCA
>probe:Drosophila_2:1634540_at:422:663; Interrogation_Position=897; Antisense; TACCTGTAATTACCTCGGGTACCAG
>probe:Drosophila_2:1634540_at:184:479; Interrogation_Position=941; Antisense; GTTTCTGCCTCGTAACAATTGCTAG

Paste this into a BLAST search page for me
ATCTGGATGCTGTTCTGCACGAAACTGCACGAAACTATGCGTCTTTACCCTTTACCCACCACAAGTGATTGTCGGAACTTCCCTGCGGTTCAGAGATCTATAATCTCTATGAACTGCAGCGCAATCAAACCACTTTGATGCGCAGCGATTATGCGCAGCGATTTTTGGACTCTCCGGAACTCCTGAGCTACAGTCTAGGTAGTCTAGGTCCTCGATGTTGTCCAGAAACATTGTTGGCTCCTATTTTGGCTGAGGTGCGCTTGGATTTGCGACTTTTGCGACTTGTTTTGGGATCATCCATACCTGTAATTACCTCGGGTACCAGGTTTCTGCCTCGTAACAATTGCTAG

Full Affymetrix probeset data:

Annotations for 1634540_at in Drosophila_2.na32.annot.csv

Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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