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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634583_s_at:

>probe:Drosophila_2:1634583_s_at:577:21; Interrogation_Position=1869; Antisense; ATATCCCCTCTTATGAGGTTTCTCA
>probe:Drosophila_2:1634583_s_at:533:435; Interrogation_Position=1883; Antisense; GAGGTTTCTCATGCATCTTAGCTAC
>probe:Drosophila_2:1634583_s_at:98:277; Interrogation_Position=1899; Antisense; CTTAGCTACCTTCGCCATAGTATGG
>probe:Drosophila_2:1634583_s_at:462:485; Interrogation_Position=1918; Antisense; GTATGGAAGGCCTAGTCGCATCCTT
>probe:Drosophila_2:1634583_s_at:399:347; Interrogation_Position=1935; Antisense; GCATCCTTGTACGACTACGGACGCG
>probe:Drosophila_2:1634583_s_at:129:549; Interrogation_Position=1953; Antisense; GGACGCGCCGACACAATTTGCGAAG
>probe:Drosophila_2:1634583_s_at:397:399; Interrogation_Position=1977; Antisense; GACACGGAAATCTTTTGCTCATTTA
>probe:Drosophila_2:1634583_s_at:641:19; Interrogation_Position=2050; Antisense; ATTTGTGGTCTCTATCTTGCTTGAT
>probe:Drosophila_2:1634583_s_at:410:429; Interrogation_Position=2075; Antisense; GAGTTTTTATTTGCTGTTCACCGTA
>probe:Drosophila_2:1634583_s_at:196:473; Interrogation_Position=2090; Antisense; GTTCACCGTAGCAGCATACTTTATG
>probe:Drosophila_2:1634583_s_at:26:407; Interrogation_Position=2119; Antisense; GACTGCGACTGAAACACTCCGAGGT
>probe:Drosophila_2:1634583_s_at:44:495; Interrogation_Position=2142; Antisense; GTCAGCCCCATTTTTGCATATGTCA
>probe:Drosophila_2:1634583_s_at:617:573; Interrogation_Position=2227; Antisense; GGCGGTTTGACCTCGGTGCTAGAAA
>probe:Drosophila_2:1634583_s_at:94:145; Interrogation_Position=2278; Antisense; ACAGTCTTAACCTCCCATATTATTT

Paste this into a BLAST search page for me
ATATCCCCTCTTATGAGGTTTCTCAGAGGTTTCTCATGCATCTTAGCTACCTTAGCTACCTTCGCCATAGTATGGGTATGGAAGGCCTAGTCGCATCCTTGCATCCTTGTACGACTACGGACGCGGGACGCGCCGACACAATTTGCGAAGGACACGGAAATCTTTTGCTCATTTAATTTGTGGTCTCTATCTTGCTTGATGAGTTTTTATTTGCTGTTCACCGTAGTTCACCGTAGCAGCATACTTTATGGACTGCGACTGAAACACTCCGAGGTGTCAGCCCCATTTTTGCATATGTCAGGCGGTTTGACCTCGGTGCTAGAAAACAGTCTTAACCTCCCATATTATTT

Full Affymetrix probeset data:

Annotations for 1634583_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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