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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634675_s_at:

>probe:Drosophila_2:1634675_s_at:438:607; Interrogation_Position=1254; Antisense; TGATGTTGTTCTATCTGCTGTGCAA
>probe:Drosophila_2:1634675_s_at:445:519; Interrogation_Position=1280; Antisense; GTGGTCACCCAGTATGTATGCATCA
>probe:Drosophila_2:1634675_s_at:191:485; Interrogation_Position=1295; Antisense; GTATGCATCAGTGCCGTCTACGTTC
>probe:Drosophila_2:1634675_s_at:313:369; Interrogation_Position=1328; Antisense; GAATGTGCATCGCTAACCGTAACGC
>probe:Drosophila_2:1634675_s_at:476:333; Interrogation_Position=1384; Antisense; GCTGTTCTCGATCATTTATTTCCGG
>probe:Drosophila_2:1634675_s_at:62:687; Interrogation_Position=1399; Antisense; TTATTTCCGGAATCCATTCACCCTA
>probe:Drosophila_2:1634675_s_at:552:175; Interrogation_Position=1423; Antisense; AAACCATTGGGTAGGCACCATCCTG
>probe:Drosophila_2:1634675_s_at:698:269; Interrogation_Position=1441; Antisense; CATCCTGGTATTCTTCGGCACAATA
>probe:Drosophila_2:1634675_s_at:197:29; Interrogation_Position=1463; Antisense; ATACTCTTCGCCAATGTGATCAACC
>probe:Drosophila_2:1634675_s_at:583:589; Interrogation_Position=1584; Antisense; TGGTTCCTGCTGCAGAGGCCATTAA
>probe:Drosophila_2:1634675_s_at:136:89; Interrogation_Position=1628; Antisense; AGTCGTAGCGCCTTGTTTGTACATA
>probe:Drosophila_2:1634675_s_at:353:19; Interrogation_Position=1655; Antisense; ATTTGCCTAGTGTTTAGACGCCTCT
>probe:Drosophila_2:1634675_s_at:676:127; Interrogation_Position=1672; Antisense; ACGCCTCTTTGTCTGGTTTGTAATT
>probe:Drosophila_2:1634675_s_at:621:653; Interrogation_Position=1692; Antisense; TAATTCTTGTGTCCGTGTCTTTCTA

Paste this into a BLAST search page for me
TGATGTTGTTCTATCTGCTGTGCAAGTGGTCACCCAGTATGTATGCATCAGTATGCATCAGTGCCGTCTACGTTCGAATGTGCATCGCTAACCGTAACGCGCTGTTCTCGATCATTTATTTCCGGTTATTTCCGGAATCCATTCACCCTAAAACCATTGGGTAGGCACCATCCTGCATCCTGGTATTCTTCGGCACAATAATACTCTTCGCCAATGTGATCAACCTGGTTCCTGCTGCAGAGGCCATTAAAGTCGTAGCGCCTTGTTTGTACATAATTTGCCTAGTGTTTAGACGCCTCTACGCCTCTTTGTCTGGTTTGTAATTTAATTCTTGTGTCCGTGTCTTTCTA

Full Affymetrix probeset data:

Annotations for 1634675_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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