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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634727_a_at:

>probe:Drosophila_2:1634727_a_at:665:167; Interrogation_Position=3912; Antisense; AAAGGCACCTCGATTCAGAATTTAC
>probe:Drosophila_2:1634727_a_at:602:553; Interrogation_Position=3939; Antisense; GGAGCTGGAACTACGACCACCAAGT
>probe:Drosophila_2:1634727_a_at:259:187; Interrogation_Position=3996; Antisense; AACAGAGAATACACCGCCTTCGGAT
>probe:Drosophila_2:1634727_a_at:170:455; Interrogation_Position=4018; Antisense; GATCACGTGGATCTAAATGCCTGCC
>probe:Drosophila_2:1634727_a_at:298:233; Interrogation_Position=4033; Antisense; AATGCCTGCCAAGCGATCGAGATAA
>probe:Drosophila_2:1634727_a_at:15:409; Interrogation_Position=4066; Antisense; GACGATTCACCTTTGGTGTCCACAA
>probe:Drosophila_2:1634727_a_at:14:229; Interrogation_Position=4129; Antisense; AAGGCCACATCCAAAGCTTGTAAAG
>probe:Drosophila_2:1634727_a_at:325:71; Interrogation_Position=4228; Antisense; AGGCTGCGCCAACCAGTAGAGACAC
>probe:Drosophila_2:1634727_a_at:424:171; Interrogation_Position=4254; Antisense; AAAGACAGCGACTCTTTCATCCAAG
>probe:Drosophila_2:1634727_a_at:158:627; Interrogation_Position=4273; Antisense; TCCAAGCGAACGAGGCGCCAGGTTT
>probe:Drosophila_2:1634727_a_at:694:539; Interrogation_Position=4293; Antisense; GGTTTTGGAAGCACAGGCTCCCGAA
>probe:Drosophila_2:1634727_a_at:73:551; Interrogation_Position=4320; Antisense; GGAGTCCATTAGCACACGCACACGG
>probe:Drosophila_2:1634727_a_at:545:155; Interrogation_Position=4339; Antisense; ACACGGCATCGGCACTGATTAGATA
>probe:Drosophila_2:1634727_a_at:67:457; Interrogation_Position=4360; Antisense; GATAGTAGTCTCCTTAGTTCGTATT

Paste this into a BLAST search page for me
AAAGGCACCTCGATTCAGAATTTACGGAGCTGGAACTACGACCACCAAGTAACAGAGAATACACCGCCTTCGGATGATCACGTGGATCTAAATGCCTGCCAATGCCTGCCAAGCGATCGAGATAAGACGATTCACCTTTGGTGTCCACAAAAGGCCACATCCAAAGCTTGTAAAGAGGCTGCGCCAACCAGTAGAGACACAAAGACAGCGACTCTTTCATCCAAGTCCAAGCGAACGAGGCGCCAGGTTTGGTTTTGGAAGCACAGGCTCCCGAAGGAGTCCATTAGCACACGCACACGGACACGGCATCGGCACTGATTAGATAGATAGTAGTCTCCTTAGTTCGTATT

Full Affymetrix probeset data:

Annotations for 1634727_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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