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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634752_a_at:

>probe:Drosophila_2:1634752_a_at:677:559; Interrogation_Position=2145; Antisense; GGAACTGCAGGGTCCAATAACCGAG
>probe:Drosophila_2:1634752_a_at:326:369; Interrogation_Position=2179; Antisense; GAATGAGTGCCGTGAGTACCATCAA
>probe:Drosophila_2:1634752_a_at:80:185; Interrogation_Position=2202; Antisense; AAAATGGACGACTTGGCCCTGACCA
>probe:Drosophila_2:1634752_a_at:702:151; Interrogation_Position=2302; Antisense; ACATAGCCGAAGTCCTGGTCAGCGA
>probe:Drosophila_2:1634752_a_at:294:473; Interrogation_Position=2384; Antisense; GTTCAACAAGGACTGGCTGCTCGAG
>probe:Drosophila_2:1634752_a_at:217:293; Interrogation_Position=2405; Antisense; CGAGCAACTGGGAACTGGCGACAAT
>probe:Drosophila_2:1634752_a_at:205:535; Interrogation_Position=2486; Antisense; GGTGCTGAGGTCCATGTTCTTCATT
>probe:Drosophila_2:1634752_a_at:714:335; Interrogation_Position=2531; Antisense; GCTGCTCACAGGCTCTTTGAAAATC
>probe:Drosophila_2:1634752_a_at:280:139; Interrogation_Position=2560; Antisense; ACGTCAGTTGGTTGCAGATGCCGCT
>probe:Drosophila_2:1634752_a_at:626:447; Interrogation_Position=2576; Antisense; GATGCCGCTGTCCTTGAATCCGGAA
>probe:Drosophila_2:1634752_a_at:610:561; Interrogation_Position=2597; Antisense; GGAACGGACCTGTCTGCACTTAAAC
>probe:Drosophila_2:1634752_a_at:305:265; Interrogation_Position=2621; Antisense; CAGACGCTGCGATTTCCAGGAGGAT
>probe:Drosophila_2:1634752_a_at:683:77; Interrogation_Position=2641; Antisense; AGGATGCCAAGCTGTCACTGCCCGA
>probe:Drosophila_2:1634752_a_at:106:615; Interrogation_Position=2698; Antisense; TGAAGCGGCGCAAGGAGTTTCCCAA

Paste this into a BLAST search page for me
GGAACTGCAGGGTCCAATAACCGAGGAATGAGTGCCGTGAGTACCATCAAAAAATGGACGACTTGGCCCTGACCAACATAGCCGAAGTCCTGGTCAGCGAGTTCAACAAGGACTGGCTGCTCGAGCGAGCAACTGGGAACTGGCGACAATGGTGCTGAGGTCCATGTTCTTCATTGCTGCTCACAGGCTCTTTGAAAATCACGTCAGTTGGTTGCAGATGCCGCTGATGCCGCTGTCCTTGAATCCGGAAGGAACGGACCTGTCTGCACTTAAACCAGACGCTGCGATTTCCAGGAGGATAGGATGCCAAGCTGTCACTGCCCGATGAAGCGGCGCAAGGAGTTTCCCAA

Full Affymetrix probeset data:

Annotations for 1634752_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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