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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634762_a_at:

>probe:Drosophila_2:1634762_a_at:140:55; Interrogation_Position=1492; Antisense; ATGAATGGAGCGACCTACCTGGGCT
>probe:Drosophila_2:1634762_a_at:85:197; Interrogation_Position=1576; Antisense; AACGGCGTGGCCAACATTATGAGCA
>probe:Drosophila_2:1634762_a_at:107:335; Interrogation_Position=1611; Antisense; GCTGATCGTCGGATTCATTGTCACA
>probe:Drosophila_2:1634762_a_at:674:167; Interrogation_Position=1635; Antisense; AAATGAGCACGATCCCGAGCAGTGG
>probe:Drosophila_2:1634762_a_at:38:115; Interrogation_Position=1652; Antisense; AGCAGTGGCGCATTGTGTTCTTCAT
>probe:Drosophila_2:1634762_a_at:227:7; Interrogation_Position=1675; Antisense; ATTGCAGCCGGATTCTACCTGGTGG
>probe:Drosophila_2:1634762_a_at:286:131; Interrogation_Position=1691; Antisense; ACCTGGTGGGCAATACTCTGTACGT
>probe:Drosophila_2:1634762_a_at:224:669; Interrogation_Position=1704; Antisense; TACTCTGTACGTGATCTTCGGCAAG
>probe:Drosophila_2:1634762_a_at:42:361; Interrogation_Position=1724; Antisense; GCAAGGCGAATGTCCAGCCCTGGAA
>probe:Drosophila_2:1634762_a_at:677:685; Interrogation_Position=1888; Antisense; TATCAATCCTATTTGCAGCCAGGTG
>probe:Drosophila_2:1634762_a_at:16:127; Interrogation_Position=1904; Antisense; AGCCAGGTGCAATGCATTCTCGCAT
>probe:Drosophila_2:1634762_a_at:685:297; Interrogation_Position=1924; Antisense; CGCATTCGCCGTGTATATTTGTAAA
>probe:Drosophila_2:1634762_a_at:501:509; Interrogation_Position=1964; Antisense; GTGACTATTTCGTATTTGCATTCCA
>probe:Drosophila_2:1634762_a_at:59:345; Interrogation_Position=1981; Antisense; GCATTCCACTCGTCTTAAGTTTTAG

Paste this into a BLAST search page for me
ATGAATGGAGCGACCTACCTGGGCTAACGGCGTGGCCAACATTATGAGCAGCTGATCGTCGGATTCATTGTCACAAAATGAGCACGATCCCGAGCAGTGGAGCAGTGGCGCATTGTGTTCTTCATATTGCAGCCGGATTCTACCTGGTGGACCTGGTGGGCAATACTCTGTACGTTACTCTGTACGTGATCTTCGGCAAGGCAAGGCGAATGTCCAGCCCTGGAATATCAATCCTATTTGCAGCCAGGTGAGCCAGGTGCAATGCATTCTCGCATCGCATTCGCCGTGTATATTTGTAAAGTGACTATTTCGTATTTGCATTCCAGCATTCCACTCGTCTTAAGTTTTAG

Full Affymetrix probeset data:

Annotations for 1634762_a_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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