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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634803_at:

>probe:Drosophila_2:1634803_at:280:117; Interrogation_Position=232; Antisense; AGCTTCCATAGCATTTCCAAACGCC
>probe:Drosophila_2:1634803_at:422:727; Interrogation_Position=266; Antisense; TTGGCGGCCCAGTGCTCAGATCAGC
>probe:Drosophila_2:1634803_at:181:581; Interrogation_Position=575; Antisense; TGGCCTACACATCTGCCAGCATTGT
>probe:Drosophila_2:1634803_at:651:313; Interrogation_Position=589; Antisense; GCCAGCATTGTCTGCGGCATTTGCA
>probe:Drosophila_2:1634803_at:240:623; Interrogation_Position=601; Antisense; TGCGGCATTTGCAGCACTCGAGTGG
>probe:Drosophila_2:1634803_at:52:265; Interrogation_Position=612; Antisense; CAGCACTCGAGTGGCCATTAGAAGA
>probe:Drosophila_2:1634803_at:571:99; Interrogation_Position=634; Antisense; AGATGTGGACGCAGACGCCTCATGA
>probe:Drosophila_2:1634803_at:693:315; Interrogation_Position=650; Antisense; GCCTCATGAGCTCCCAATTAGTGTT
>probe:Drosophila_2:1634803_at:521:417; Interrogation_Position=657; Antisense; GAGCTCCCAATTAGTGTTGGATTAC
>probe:Drosophila_2:1634803_at:505:465; Interrogation_Position=672; Antisense; GTTGGATTACATATTTGTAGCCCGA
>probe:Drosophila_2:1634803_at:505:19; Interrogation_Position=684; Antisense; ATTTGTAGCCCGATCCTGCGGCATT
>probe:Drosophila_2:1634803_at:416:449; Interrogation_Position=695; Antisense; GATCCTGCGGCATTGTAACCAAATT
>probe:Drosophila_2:1634803_at:360:699; Interrogation_Position=732; Antisense; TTATGGACAAATTCGGAAAGCCGGC
>probe:Drosophila_2:1634803_at:621:391; Interrogation_Position=747; Antisense; GAAAGCCGGCAAGCCGAGCCGGATA

Paste this into a BLAST search page for me
AGCTTCCATAGCATTTCCAAACGCCTTGGCGGCCCAGTGCTCAGATCAGCTGGCCTACACATCTGCCAGCATTGTGCCAGCATTGTCTGCGGCATTTGCATGCGGCATTTGCAGCACTCGAGTGGCAGCACTCGAGTGGCCATTAGAAGAAGATGTGGACGCAGACGCCTCATGAGCCTCATGAGCTCCCAATTAGTGTTGAGCTCCCAATTAGTGTTGGATTACGTTGGATTACATATTTGTAGCCCGAATTTGTAGCCCGATCCTGCGGCATTGATCCTGCGGCATTGTAACCAAATTTTATGGACAAATTCGGAAAGCCGGCGAAAGCCGGCAAGCCGAGCCGGATA

Full Affymetrix probeset data:

Annotations for 1634803_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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