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FlyAtlas: the Drosophila gene expression atlas

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Biotechnology & Biological Sciences Research Council
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Latest news: FlyAtlas2 : A Database web-app for fruitfly expression with added RNA & miRNA goodness ! Click here to visit the application. Read all about it here.


This dataset was generated by Venkat Chintapalli, Jing Wang & Julian Dow at the University of Glasgow with funding from the UK's BBSRC.
It gives you a quick answer to the question: where is my gene of interest expressed/enriched in the adult fly?
For each gene & tissue, you're given the mRNA SIGNAL (how abundant the mRNA is), the mRNA ENRICHMENT (compared to whole flies), and the Affymetrix PRESENT CALL (out of 4 arrays, how many times it was detectably expressed).

looking for 1634855_s_at:

>probe:Drosophila_2:1634855_s_at:191:575; Interrogation_Position=1654; Antisense; GGCGGCAGATGCAGGTATCACCAAA
>probe:Drosophila_2:1634855_s_at:37:143; Interrogation_Position=1704; Antisense; ACTGATGAGAGAGACTTGCGCCCCT
>probe:Drosophila_2:1634855_s_at:645:623; Interrogation_Position=1720; Antisense; TGCGCCCCTTTGAGCTTTTAAAATT
>probe:Drosophila_2:1634855_s_at:642:457; Interrogation_Position=1788; Antisense; GATATGCATACGAATTGGCGCACTT
>probe:Drosophila_2:1634855_s_at:61:583; Interrogation_Position=1803; Antisense; TGGCGCACTTGCTTATATTTGATAT
>probe:Drosophila_2:1634855_s_at:713:465; Interrogation_Position=1834; Antisense; GTTAGTTAGATACATTCCGAGGTTG
>probe:Drosophila_2:1634855_s_at:337:427; Interrogation_Position=1858; Antisense; GAGATGTCGAGGTCGCTGGCAAAAT
>probe:Drosophila_2:1634855_s_at:578:521; Interrogation_Position=1887; Antisense; GGGCCACCAGAAACGACCGATTTGA
>probe:Drosophila_2:1634855_s_at:2:75; Interrogation_Position=1915; Antisense; AGGAAAGGGCTCTGAGTCCGCCTAT
>probe:Drosophila_2:1634855_s_at:668:431; Interrogation_Position=1928; Antisense; GAGTCCGCCTATATCAGTAGCTAAT
>probe:Drosophila_2:1634855_s_at:407:459; Interrogation_Position=1956; Antisense; GATATAACTTGTAACCGCTCCACAG
>probe:Drosophila_2:1634855_s_at:723:309; Interrogation_Position=1975; Antisense; CCACAGACGAGCGACTTTCGTGAAT
>probe:Drosophila_2:1634855_s_at:300:297; Interrogation_Position=2022; Antisense; CCCCTCCCTGAATAATTGAGCGTTA
>probe:Drosophila_2:1634855_s_at:297:139; Interrogation_Position=2072; Antisense; ACGATTGATTGTGTTGCGAGTTACA

Paste this into a BLAST search page for me
GGCGGCAGATGCAGGTATCACCAAAACTGATGAGAGAGACTTGCGCCCCTTGCGCCCCTTTGAGCTTTTAAAATTGATATGCATACGAATTGGCGCACTTTGGCGCACTTGCTTATATTTGATATGTTAGTTAGATACATTCCGAGGTTGGAGATGTCGAGGTCGCTGGCAAAATGGGCCACCAGAAACGACCGATTTGAAGGAAAGGGCTCTGAGTCCGCCTATGAGTCCGCCTATATCAGTAGCTAATGATATAACTTGTAACCGCTCCACAGCCACAGACGAGCGACTTTCGTGAATCCCCTCCCTGAATAATTGAGCGTTAACGATTGATTGTGTTGCGAGTTACA

Full Affymetrix probeset data:

Annotations for 1634855_s_at in Drosophila_2.na32.annot.csv


Chintapalli, V. R., Wang, J. and Dow, J. A. T. (2007). Using FlyAtlas to identify better Drosophila models of human disease. Nature Genetics 39: 715-720

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